Table 2.
Properties of COVID-19 Mpro potential inhibitor candidates.
| Chemical constituent | Binding energy | Inhibition | Lipinski rule | Target Prediction | |
|---|---|---|---|---|---|
| Hydroxychloroquine | −3.85 kcal/mol | 1.50 mM | Molecular weight | 335.87 | Tyrosine-protein kinase SYK |
| #H-bond acceptors | 3 | Tyrosine-protein kinase LCK | |||
| #H-bond donors | 2 | Macrophage colony stimulating factor receptor | |||
| iLOGP | 3.58 | ||||
| Lipinski #violations | 0 | ||||
| Quinine | −5.62 kcal/mol | 0.0761 mM | Molecular weight | 324.42 | Tyrosine-protein kinase ABL |
| #H-bond acceptors | 4 | Tyrosine-protein kinase LCK | |||
| #H-bond donors | 1 | Tyrosine-protein kinase SYK | |||
| iLOGP | 3.36 | Macrophage stimulating protein receptor | |||
| Lipinski #violations | 0 | ||||
| Sunthi (Zingiber officinale Roscoe) | |||||
| 6gingesulphonic acid | −6.20 kcal/mol | 5.36 mM | Molecular weight | 358.45 | Interferon-induced, double-stranded RNA-activated protein kinase |
| #H-bond acceptors | 6 | Angiotensin converting enzyme | |||
| #H-bond donors | 2 | Tyrosine-protein kinase LCK- | |||
| iLOGP | 2.48 | Tyrosine-protein kinase HCK | |||
| Lipinski #violations | 0 | ||||
| Pushkarmool (Inula racemose Hook.F.) | |||||
| Alantolactum | −6.70 kcal/mol | 0.01540 mM | Molecular weight | 232.32 | Inhibitor of nuclear factor kappa B kinase beta subunit |
| #H-bond acceptors | 2 | T-cell protein-tyrosine phosphatase p | |||
| #H-bond donors | 0 | Protein-tyrosine phosphatase 1B | |||
| iLOGP | 2.75 | ||||
| Lipinski #violations | 0 | ||||
| Guduchi (Tinospora cordifolia Miers) | |||||
| Berberine | −7.00 kcal/mol | 0.01757 mM | Molecular weight | 336.36 | Inhibitor of nuclear factor kappa B kinase beta subunit |
| #H-bond acceptors | 0 | ||||
| #H-bond donors | 0 | ||||
| iLOGP | 0 | ||||
| Lipinski #violations | 0 | ||||
| Kantakari (Solanum xanthocarpum L.) | |||||
| Stigmasterol | −6.90 kcal/mol | 0.01083 mM | Molecular weight | 412.69 | Angiotensin converting enzyme |
| #H-bond acceptors | 1 | Indoleamine 2,3dioxygenase | |||
| #H-bond donors | 1 | Protein-tyrosine phosphatase 1B | |||
| iLOGP | 4.76 | ||||
| Lipinski #violations | 1 | ||||
| Pippali (Piper longum L.) | |||||
| Bisdemethoxycurcumin | −6.90 kcal/mol | 0.10335 mM | Molecular weight | 308.33 | Glycogen synthase kinase-3 beta |
| #H-bond acceptors | 4 | Inhibitor of NFkappa-B kinase (IKK) | |||
| #H-bond donors | 2 | Macrophage colony stimulating factor receptor | |||
| iLOGP | 1.75 | ||||
| Lipinski #violations | 0 | ||||
| Haridra (Curcuma longa L.) | |||||
| Demethoxycurcumin | −6.20 kcal/mol | 0.188.74 mM | Molecular weight | 338.35 | Inhibitor of NFkappa-B kinase (IKK) |
| #H-bond acceptors | 5 | Toll-like receptor (TLR7/TLR9) | |||
| #H-bond donors | 2 | Tyrosine-protein kinase Lyn | |||
| iLOGP | 2.78 | Tyrosine-protein kinase BTK | |||
| Lipinski #violations | 0 | ||||
| Shatavari (Asparagus racemosus Willd) | |||||
| Kaempferol | −6.70 kcal/mol | 0.06181 mM | Molecular weight | 286.24 | Tyrosine-protein kinase SRC |
| #H-bond acceptors | 6 | Tyrosine-protein kinase receptor UFO | |||
| #H-bond donors | 4 | Interleukin-8 receptor A | |||
| iLOGP | 1.7 | ||||
| Lipinski #violations | 0 | ||||
| Gokshura (Tribulus terrestris L.) | |||||
| Gitogenin | −8.00 kcal/mol | 0.00366 mM | Molecular weight | 432.64 | Tyrosine-protein kinase JAK3 |
| #H-bond acceptors | 4 | Nuclear receptor ROR-gamma | |||
| #H-bond donors | 2 | ||||
| iLOGP | 4.19 | ||||
| Lipinski #violations | 1 | ||||
| Yashtimadhu (Glycyrriza glabra L.) | |||||
| Glycerol | −8.47 kcal/mol | 0.00062273 mM | Molecular weight | 92.09 | Glycogen synthase kinase-3 beta |
| #H-bond acceptors | 3 | Tyrosine-protein kinase ABL | |||
| #H-bond donors | 3 | Tyrosine-protein kinase JAK1 | |||
| iLOGP | 0.45 | Tyrosine-protein kinase JAK3 | |||
| Lipinski #violations | 0 | Tyrosine-protein kinase LCK | |||
| Musta (Cyprus rotundus L.) | |||||
| Patcholane | −6.12 kcal/mol | 0.03258 mM | Molecular weight | 206.37 | Interleukin-6 receptor subunit beta |
| #H-bond acceptors | 0 | Tyrosine-protein kinase JAK1 | |||
| #H-bond donors | 0 | Tyrosine-protein kinase JAK2 | |||
| iLOGP | 3.22 | Tyrosine-protein kinase JAK3 | |||
| Lipinski #violations | 1 | Tyrosine-protein kinase TYK2 | |||