REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
Fluorescein isothiocyanate (FITC)-conjugated anti-rabies virus nucleoprotein (RABV N) monoclonal globulin | Fujirebio | Cat#800-092; RRID: AB_2802166 |
U.S. standard rabies immune globulin | Center for Biologics Evaluation & Research, US Food and Drug Administration | Lot R-3 |
Mouse anti-RABV G mAb 1C5 | Abcam | Cat#Ab82460; RRID: AB_1658373 |
Mouse anti-Lyssavirus G mAb 1409-7 | Provided by Dr. Todd Smith, US Centers for Disease Control and Prevention | (Dietzschold et al., 1988) |
Human anti-RABV G mAb 4C12 | Provided by Dr. Scott Dessain, Lankenau Institute for Medical Research | N/A |
Pooled mouse anti-MOKV G sera | Provided by Dr. Gene Tan, J. Craig Venter Institute | N/A |
HRP-conjugated goat anti-mouse IgG (H+L) | Jackson Immunoresearch | Cat#115-035-146; RRID: AB_2307392 |
Cy3-conjugated goat anti-mouse IgG | Jackson Immunoresearch | Cat#115-165-146; RRID: AB_2338690 |
Bacterial and Virus Strains | ||
Stellar competent cells | Clontech/Takara | Cat#636763 |
VSVΔG-GFP-RABVG | Schnell Laboratory | (Abreu-Mota et al., 2018) |
VSVΔG-NanoLuc-EGFP | Schnell Laboratory | (Abreu-Mota et al., 2018) |
MOKV G pseudotype viruses (MOKV G PTVs) | This paper | N/A |
Irkut virus (IRKV, RFFIT) | Provided by Dr. Todd Smith, US Centers for Disease Control and Prevention | N/A |
European bat lyssavirus 1 (EBLV1, RFFIT) | Provided by Dr. Todd Smith, US Centers for Disease Control and Prevention | N/A |
Duvenhage virus (DUVV, 86132SA) | Provided by Dr. Todd Smith, US Centers for Disease Control and Prevention | GenBank: EU293119.1 |
Lagos bat virus (LBV, lineage B, isolate 8619NGA) | Provided by Dr. Todd Smith, US Centers for Disease Control and Prevention | GenBank: EU293110.1 |
Lagos bat virus (LBV, lineage D, isolate KE576) | Provided by Dr. Todd Smith, US Centers for Disease Control and Prevention | GenBank: GU170202.1 |
Shimoni bat virus (SHIBV, Kenya, 2009) | Provided by Dr. Todd Smith, US Centers for Disease Control and Prevention | GenBank: GU170201.1 |
Mokola virus (MOKV, isolate 252/97) | Provided by Dr. Todd Smith, US Centers for Disease Control and Prevention | GenBank: GQ500112.1 |
rRABV | This paper | N/A |
RABV (CVS-11 strain) | Schnell Laboratory | N/A |
RABV (N2c) | Schnell Laboratory | N/A |
RABV (SPBN) | Schnell Laboratory | (McGettigan et al., 2001) |
Biological Samples | ||
Soluble RABV G | Schnell Laboratory | (Blaney et al., 2013) |
Soluble MOKV G | This paper | N/A |
Chemicals, Peptides, and Recombinant Proteins | ||
β-propiolactone (BPL) | Sigma | Cat#P5648 |
SYPRO Ruby Protein Gel Stain | Invitrogen | Cat#S12000 |
Glucopyranosyl lipid adjuvant-stable emulsion (GLA-SE) | Infectious Disease Research Institute | Cat#EM-082 |
octyglucopyranoside (OGP) | Fisher | Cat#BP585-5 |
Vectashield Hard Set containing 4′,6-diamidino-2-phenylindole (DAPI) | Vector Laboratories | Cat#H-1500 |
SIGMAFAST o-phenylenediamine dihydrochloride (OPD) tablets | Sigma | Cat#P9187-50SET |
Passive cell culture lysis buffer | Promega | Cat#E1941 |
Critical Commercial Assays | ||
SuperScript II Reverse Transcriptase | Invitrogen | Cat#10928-034 |
Bicinchoninic acid (BCA) assay kit | Pierce | Cat#23250 |
Nano-Glo Luciferase Assay System | Promega | Cat#N113 |
Experimental Models: Cell Lines | ||
Mouse neuroblastoma (NA) cells | Schnell Laboratory | N/A |
BSR cells (derivative of BHK-21) | Schnell Laboratory | N/A |
Vero cells | ATCC | CCL81 |
BEAS-2b cells | ATCC | CRL-9609 |
Experimental Models: Organisms/Strains | ||
Swiss Webster mice | Charles River | 24107540 |
Oligonucleotides | ||
MOKV G forward oligo (CO-041) 5′- TAACACCCCTCCCGTACGACCA TGAACCTACCCTGTCTGAC-3′ |
IDT | N/A |
MOKV G reverse oligo (CO-042) 5′ GTGTTAGTTTTTTTCATGGCTAGC TCATGTACCAGGGAGC-3′ |
IDT | N/A |
Fragment 1 forward oligo for Chimeric G 1 (CO-062) 5′-TTGGCAAAGAATTCG AGCTCCGTACGGCCGCCACCATG-3′ |
IDT | N/A |
Fragment 1 reverse oligo for Chimeric G 1 (CO-063) 5′-GTTGCAGCCCTCCTC CTCGACCACCAGATTGTTA-3′ |
IDT | N/A |
Fragment 2 forward oligo for Chimeric G 1 (CO-064) 5′- GAGGAGGGCTGCA ACGCC-3′ |
IDT | N/A |
Fragment 2 reverse oligo for Chimeric G 1 (CO-065) 5′- CCTGAAGTCGTGCAGA TTGACCAGCTGGTTGGG-3′ |
IDT | N/A |
Fragment 3 forward oligo for Chimeric G 1 (CO-066) 5′- CTGCACGACTTCA GGAGC-3′ |
IDT | N/A |
Fragment 3 reverse oligo for Chimeric G 1 and Fragment 4 reverse oligo for Chimeric G 2 (CO-067) 5′- AAAAAGATCTGCTAGCTC ACAGCCTGGTCTCGCC-3′ |
IDT | N/A |
Fragment 1 forward oligo for Chimeric G 2 (CO-068) 5′- TTGGCAAAGAATTCGAG CTCCGTACGAAAAAGCGGCCG-3′ |
IDT | N/A |
Fragment 1 reverse oligo for Chimeric G 2 (CO-069) 5′- GGTACACCCTTCGTCTTG GGAGAGCAGATTATTCG-3′ |
IDT | N/A |
Fragment 2 forward oligo for Chimeric G 2 (CO-070) 5′- GACGAAGGGTGTA CCAAC-3′ |
IDT | N/A |
Fragment 2 reverse oligo for Chimeric G 2 (CO-071) 5′- GCGGTCATTGTGTAT ATTCACCAGTTTGTCAGGG-3′ |
IDT | N/A |
Fragment 3 forward oligo for Chimeric G 2 (CO-072) 5′- ATACACAATGACC GCCTTG-3′ |
IDT | N/A |
Fragment 3 reverse oligo for Chimeric G 2 (CO-073) 5′- CACTGTGGAGGGATCA ATCAGAGGGTGTCGCAAT-3′ |
IDT | N/A |
Fragment 4 forward oligo for Chimeric G 2 (CO-074) 5′- GATCCCTCCACAGTGTTC-3′ | IDT | N/A |
Forward RT-PCR primer for amplifying G in RABV vectors 5′- GGAGGTCGACTAA AGAGATCTCACATAC-3′ |
IDT | N/A |
Reverse RT-PCR primer for amplifying G in RABV vectors 5′- TTCTTCAGCCATCTCA AGATCGGCCAGAC |
IDT | N/A |
Recombinant DNA | ||
BNSPΔG cDNA | Schnell Laboratory | (Blaney et al., 2011) |
BNSP333 cDNA | Schnell Laboratory | (Blaney et al., 2011) |
rRABV cDNA | This paper | N/A |
rMOKV cDNA | This paper | N/A |
rChimera1 cDNA | This paper | N/A |
rChimera2 cDNA | This paper | N/A |
pCAGGS-coMOKVG | Provided by Dr. Gene Tan, J. Craig Venter Institute | MOKV.NIG68-RV4 strain (Wright et al., 2010), GenBank accession number HM623780 |
pCAGGS-coRABVG | This paper | N/A |
pCAGGS-ChimericG1 | This paper | N/A |
pCAGGS-ChimericG2 | This paper | N/A |
pTIT-RABVN | Schnell Laboratory | (Gomme et al., 2010) |
pTIT-RABVP | Schnell Laboratory | (Gomme et al., 2010) |
pTIT-RABVL | Schnell Laboratory | (Gomme et al., 2010) |
pCAGGS-T7 | Schnell Laboratory | (Gomme et al., 2010) |
Software and Algorithms | ||
Fiji | https://imagej.net/Fiji | (Schindelin et al., 2012) |
I-TASSER | https://zhanglab.ccmb.med.umich.edu/I-TASSER/ | (Zhang, 2008) |
SWISS-MODEL | https://swissmodel.expasy.org/ | (Waterhouse et al., 2018) |
Phyre2 | http://www.sbg.bio.ic.ac.uk/∼phyre2/html/page.cgi?id=index | (Kelley et al., 2015) |
GraphPad Prism for macOS (Version 8) | https://www.graphpad.com/ | N/A |
The PyMOL Molecular Graphics System, Version 2 by Schrödinger, LLC. | https://pymol.org/2/ | N/A |
Other | ||
InFusion Cloning Kit | Clontech/Takara | Cat#639649 |
X-tremeGENE 9 transfection reagent | Millipore Sigma | Cat#06365809001 |
PureLink RNA Mini Kit | Ambion | Cat#12183018A |