TABLE 3.
Rid proteins in representative organismsa
| Representative organism | No. of Rid proteins encoded |
||||||||
|---|---|---|---|---|---|---|---|---|---|
| Total | RidA | Rid1 | Rid2 | Rid3 | Rid4 | Rid5 | Rid6 | Rid7 | |
| Archaea | |||||||||
| Pyrococcus furiosus | 1 | 1 | |||||||
| Sulfolobus tokodaii | 1 | 1 | |||||||
| Bacteria | |||||||||
| Actinobacteria | |||||||||
| Mycobacterium smegmatis | 9 | 4 | 4 | 1 | |||||
| Mycobacterium tuberculosis | 2 | 1 | 1 | ||||||
| Streptomyces coelicolor | 12 | 9 | 1 | 2 | |||||
| Streptomyces griseus | 8 | 5 | 1 | 1 | 1 | ||||
| Bacteroidetes | |||||||||
| Bacteroides fragilis | 2 | 1 | 1 | ||||||
| Deinococcus-Thermus | |||||||||
| Thermus thermophilus | 1 | 1 | |||||||
| Firmicutes | |||||||||
| Clostridium difficile | 3 | 2 | 1 | ||||||
| Bacillus subtilis | 1 | 1 | |||||||
| Streptococcus pyogenes | 2 | 2 | |||||||
| Alphaproteobacteria | |||||||||
| Bradyrhizobium japonicum | 16 | 9 | 1 | 5 | 1 | ||||
| Caulobacter crescentusb | 3 | 1 | 1 | 1 | |||||
| Rhodopseudomonas palustris | 6 | 3 | 1 | 1 | 1 | ||||
| Betaproteobacteria | |||||||||
| Neisseria meningitidis | 2 | 1 | 1 | ||||||
| Bordetella pertussis CS | 9 | 6 | 1 | 1 | 1 | ||||
| Burkholderia cepacia | 17 | 8 | 3 | 2 | 1 | 1 | 2 | ||
| Deltaproteobacteria | |||||||||
| Campylobacter jejuni | 2 | 1 | 1 | ||||||
| Myxococcus xanthus | 4 | 4 | |||||||
| Helicobacter pylori | 1 | 1 | |||||||
| Gammaproteobacteria | |||||||||
| Acinetobacter baylyib | 7 | 4 | 1 | 2 | |||||
| Erwinia amylovora | 2 | 1 | 1 | ||||||
| Escherichia colib | 4 | 2 | 1 | 1 | |||||
| Haemophilus influenzae | 3 | 2 | 1 | ||||||
| Pseudomonas aeruginosa | 9 | 2 | 1 | 3 | 1 | ||||
| Pseudomonas putida | 10 | 7 | 2 | 1 | |||||
| Pseudomonas syringaeb | 8 | 5 | 1 | 1 | 1 | ||||
| Salmonella enterica | 3 | 1 | 1 | 1 | |||||
| Yersinia pestis | 3 | 1 | 1 | ||||||
| Eukarya | |||||||||
| Saccharomyces cerevisiae | 2 | 2 | |||||||
| Arabidopsis thaliana | 2 | 2 | |||||||
| Zea mays | 1 | 1 | |||||||
| Homo sapiens | 1 | 1 | |||||||
a
Genomes and annotations accessed from the PubSEED database (https://pubseed.theseed.org/).
b
Organism additionally encodes RutC, a member of the Rid superfamily that has not been assigned a subfamily.