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. 2020 Jul 15;11:1663. doi: 10.3389/fmicb.2020.01663

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Copyright © 2020 Jouhten, Ronkainen, Aakko, Salminen, Mattila, Arkkila and Satokari.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Visual comparison of genomic content of all the 65 sequenced bifidobacterial isolates from FMT donors and their recipients. Colored brackets with group labels refer to the rep-PCR fingerprint groups. The upper layer presents genomic content with known and unknown clusters of orthologous groups (COGs) in green and white, respectively. The second layer presents core genome as single copy gene (SCG) functions in dark brown. DX and DY, FMT donors; PX1-4 and PX6-7, FMT recipients of DX; PY1 and PY5, FMT recipients of DY; F1, F2, F4, F5, and F7, 3 days, 2 weeks, 2, 4, and 12 months post-FMT, respectively; pv1-54, isolate codes; DX_pv5_PacBio and DX_pv32_PacBio, two DX isolate genomes that were sequenced by PacBio in addition to MiSeq; *, B. animalis isolate; **, B. adolescentis isolate not belonging to the DX-1 group.