TABLE 3.
Parameters of the genome organization of Halophytophthora viruses and their initial contigs.
Initial contig length (nt) | Genome size (nt) | Largest ORF (nt) | Largest ORF (aa) | Function | Read Number | Coverage | |
Halophytophthora RNA virus 1 | 9,341 | 9,340 | 8,184 | 2,728 | RdRp | 630,934 | 5,066 |
Halophytophthora RNA virus 2 | 9,134 | 9,152 | 8,361 | 2,787 | RdRp | 15,298 | 126 |
Halophytophthora RNA virus 3 | 9,113 | 9,184 | 8,985 | 2,995 | RdRp | 716,385 | 5,850 |
Halophytophthora RNA virus 4 | 7,794 | 7,822 | 7,716 | 2,572 | RdRp | 341,627 | 3,275 |
Halophytophthora RNA virus 5 | 7,103 | 7,735 | 6,681 | 2,227 | RdRp | 376,150 | 3,647 |
Halophytophthora RNA virus 6 | 6,326 | 7,742 | 5,796 | 1,932 | RdRp | 843,893 | 8,175 |
Halophytophthora RNA virus 7 | 5,644 | 6,789 | 6,705 | 2,235 | RdRp | 264,248 | 2,919 |
Halophytophthora RNA virus 8* | 3,299 | 7,874 | 7,788 | 2,596 | RdRp | 720,641 | 6,864 |
*The length of the 3′ end remains unsure.