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. 2020 Jul 10;16(7):e1007731. doi: 10.1371/journal.pcbi.1007731

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© 2020 Foglierini et al

This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

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Fig 1 — Dnaml workflow is used (left part of the figure), DNA sequences are aligned with Clustal Ω and processed by Dnaml, a phylogenetic tree is generated. If the Immcantation workflow is used (right part of the figure), reads are processed through Change-O pipeline and IgPhyML will generate the trees. AncesTree processes the different inputs and reconstructs the phylogenic tree with all information related to Ig. The tree is displayed in a GUI and an Extensible Markup Language (XML) file is produced (that could be used as direct input into AncesTree).