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. 2020 Jul 9;9:e55388. doi: 10.7554/eLife.55388
shRNA
Target Sense References
scramble CCTAAGGTTAAGTCGCCCTCG Addgene plasmid #8455
Adipor1 KD GTACGTCCAGGCTTCAAATAA TRCN0000249147
Adipor2 KD GCAGGAATTTCGTTTCATGAT TRCN0000175771
Pgc1α KD TAACTATGCAGACCTAGATAC TRCN0000219080
qPCR
Target Forward Reverse
Eef1α CACATCCCAGGCTGACTGT TCGGTGGAATCCATTTTGTT
Bmal1 TGACCCTCATGGAAGGTTAGAA CAGCCATCCTTAGCACGGT
Per2 GCCAAGTTTGTGGAGTTCCTG CTTGCACCTTGACCAGGTAGG
Dbp AATGACCTTTGAACCTGATCCCGCT GCTCCAGTACTTCTCATCCTTCTGT
Rev-erbα AGCTCAACTCCCTGGCACTTAC CTTCTCGGAATGCATGTTGTTC
Npy CTCCGCTCTGCGACACTAC GGAAGGGTCTTCAAGCCTTGT
Agrp ATGCTGACTGCAATGTTGCTG CAGACTTAGACCTGGGAACTCT
Pomc ATGCCGAGATTCTGCTACAGT TCCAGCGAGAGGTCGAGTTT
Adipor1 AATGGGGCTCCTTCTGGTAAC GCAGACCTTATACACGAACTCC
Adipor2 CCTTTCGGGCCTGTTTTAAGA GAGTGGCAGTACACCGTGTG
Pgc1a AACCAGTACAACAATGAGCCTG AATGAGGGCAATCCGTCTTCA
CRISPRsgRNA
Target
Bmal1 KO CCCACAGTCAGATTGAAAAG
Cloning
Target Forward Reverse References
Npy promoter GTCCAGGAGGTGATGAACCTATGTTCTTTATGG GCGCCCCTGTCCCAGTTGATCCTGGC Fick et al., 2010
ChIP
Bmal1 RORE TTGGGCACAGCGATTGGTGG TCCGGCGCGGGTAAACAGG
Bmal1 3'UTR CTGTGTGCATCGGACAGTC CGAAGCCACCATCTGAAAC