Table 1.
Nitrate-responsive transcription factors and their experimentally validated DNA binding sites.
| TF Id (TAIR) | TF Id (RGAP) | Motif details | TF class | TF-binding-sitesRef | Enriched motifs in the promoter of light-nitrate up-regulated DEGs (oligo-analyses-RSAT) | |||
|---|---|---|---|---|---|---|---|---|
| cccgcc | Cgtggc | acgtgg | cacgtgg | |||||
| At1g49720 | No ortholog | ABFs binding site motif | bZIP | CACGTGGC58 | − | + | + | + |
| At1g45249 | LOC_Os06g10880.1 | ABFs binding site motif | bZIP | CACGTGGC58 | − | + | + | + |
| At4g25470 | LOC_Os04g48350.1 | CBF2 binding site motif | AP2-EREBP | CCACGTGG59 | − | − | + | + |
| At4g36730a | LOC_Os06g43870.1 | GBF1/2/3 BS in ADH1 | bZIP | CCACGTGG60 | − | − | + | + |
| At4g01120a | No ortholog | GBF1/2/3 BS in ADH1 | bZIP | CCACGTGG60 | − | − | + | + |
| At2g46270 | LOC_Os01g46970.1 | GBF1/2/3 BS in ADH1 | bZIP | CCACGTGG60 | − | − | + | + |
| At3g19290a | LOC_Os09g28310.1 | ABRE binding site motif | bZIP | (C/T)ACGTGGC61 | − | + | + | − |
| At5g65210a | No ortholog | TGA1 binding site motif | bZIP | TGACGTGG62 | − | − | + | − |
| At2g36011 | No ortholog | E2F-varient binding site motif | E2F-DP | TCTCCCGCC63 | + | − | − | − |
Ref reference.
aNitrate regulated transcription factors in Arabidopsis57.