Table 1.
Assembly parameters and genome features of the grape phylloxera genome, version V3.1
| Parameters | Numbers |
|---|---|
| Assembly | Version 3.1 |
| Contigs | |
| Total assembly size | 282,671,353 |
| Number of contigs | 17,162 |
| Contig N50 length (bp) | 74,750 |
| Longest contig (bp) | 718,286 |
| Shortest contig (bp) | 83 |
| Number of contigs > 10 kb | 4914 |
| Mean (median) contig size, in bp | 16,107 (1635) |
| Scaffolds | |
| Number of scaffolds | 10,492 |
| Longest scaffold (bp) | 2,080,308 |
| Shortest scaffold (bp) | 141 |
| Number of scaffolds > 1 Mb | 19 |
| Mean (median) scaffold size, in bp | 26,942 (1077) |
| N50 scaffold length (bb) | 341,590 |
| Genomic features (OGS 3.2) | |
| Mean transcripts length (bp) | 4653 |
| Mean CDS length (bp) | 1053 |
| Mean exon length (bp) | 244 |
| Mean exon number per gene | 5.4 |
| Gene count | 25,825 |
| BUSCO analysis (genome v3.1) | |
| Complete BUSCO | 1563/1658 (94.2%) |
| Complete and single-copy BUSCOs | 1531/1658 (92.3%) |
| Complete and duplicated BUSCOs | 32/1658 (1.9%) |
| Fragmented BUSCOs | 26/1658 (1.6%) |
| Missing BUSCOs | 69/1658 (4.2%) |