TABLE 1.
Transposase family sequences in Pseudomonas aeruginosa CMC-115
| Transposase family | Gene location | Locus tag | ISa | Originb | Accession no. |
|---|---|---|---|---|---|
| IS3 (ISPa57) | 296203..297536 | GO602_01345 | IRL: TGTCTAGTCCTGAAATAGGTTTACACCTGCTCAGGTAGGCCGATAGGCCTCAAAACGCCCGAT; IRR: TGTCCCGCGCCAGATGGAGTTTTCGTCAGATGACAAGGACAGGTGACCTACAAGC | P. aeruginosa DK1, P. aeruginosa PA7 | LN870292 |
| IS3 (ISPa57) | 410967..412186 | GO602_01860 | IRL: TGTCCCGTCCTGAATAAGGTTTACACCTCCCATGCCGATTTTCCGGAGAGCTAGATGGAGCAA; IRR: TGTCTAGTCCTGAAATAGGTTTACACCTGCTCAGGTAGGCCGATAGGCCTCAAAA | P. aeruginosa DK1, P. aeruginosa PA7 | LN870292 |
| IS3 (ISPa57) | 2029342..2030561 | GO602_09640 | IRL: TGTCTAGTCCTGAAATAGGTTTACACCTGCTCAGGTAGGCCGATAGGCCTCAAAACGCCCGAT; IRR: TGTCCCGTCCTGAATAAGGTTTACACCTCCCATGCCGATTTTCCGGAGAGCTAGA | P. aeruginosa DK1, P. aeruginosa PA7 | LN870292 |
| IS3 (ISPa57) | 2674283..2675502 | GO602_12475 | IRL: TGTCTAGTCCTGAAATAGGTTTACACCTGCTCAGGTAGGCCGATAGGCCTCAAAACGCCCGAT; IRR: TGTCCCGTCCTGAATAAGGTTTACACCTCCCATGCCGATTTTCCGGAGAGCTAGA | P. aeruginosa DK1, P. aeruginosa PA7 | LN870292 |
| IS3 (ISPa57) | 4870826..4872045 | GO602_22695 | IRL: TGTCTAGTCCTGAAATAGGTTTACACCTGCTCAGGTAGGCCGATAGGCCTCAAAACGCCCGAT; IRR: TGTCCCGTCCTGAATAAGGTTTACACCTCCCATGCCGATTTTCCGGAGAGCTAGA | P. aeruginosa DK1, P. aeruginosa PA7 | LN870292 |
| IS3 (ISPa57) | 4953930..4955149 | GO602_23110 | IRL: TGTCTAGTCCTGAAATAGGTTTACACCTGCTCAGGTAGGCCGATAGGCCTCAAAACGCCCGAT; IRR: TGTCCCGTCCTGAATAAGGTTTACACCTCCCATGCCGATTTTCCGGAGAGCTAGA | P. aeruginosa DK1, P. aeruginosa PA7 | LN870292 |
| IS21 (ISDev1) | 858147..859679 | GO602_04065 | IRL: TGTTGGTTTGCACGCGGAACTGAGCCAGTTTTTCCACCGAGAAGTGAGCCACCTCTA; IRR: TGTTGGTTTCCACGCAGAACTGAGCCAATTAGGCAGATAATTTCCATTGA | Devosia sp. I507, Aquamicrobium sp. | CP026747 |
| IS3 (ISPa86) | 11568120..1157562 | GO602_05530 | IRL: TCTACCCCGTTACCACGGACATTTTCGAGTAAGCTCACGCTGAGCTGAAGGAGTA; IRR: TGCGCCAACGCCTGGCTCGGTTGTCGCGCGCGGTAGCCACCTCGCTGCG | P. aeruginosa | MF344569 |
| ISNCY (ISPa6) | 1327230..1327763 | GO602_06370 | IRL: TGGTGTTGGTGTCGTGCCACGAGGGGATGAATAGGGTGGGTTGAAAAACGAATG; IRR: TGTGCGGGGTTCTTCATTAAAGAGAAATAAAAACCCAAGGTGTTCA | P. aeruginosa PAO-muc | U16784 |
| IS4 (ISPen1) | 2789284..2790672 | GO602_12805 | IRL: TGGCACTTACTTAACCCTTTTCGGATGACCGTGTTTCTTGATCGCTGCCCGAGCAGATT; IRR: TGGCACTTACTTAAGCGCTAAGCGATTGATTCAGAAAAGAAAGGCTG | Pseudomonas entomophila L48 | NC_008027 |
| IS3 (ISPa32) | 3154955..3156092 | GO602_14355 | IRL: TGACCTGCTCCCCGATTTCAGTACCACGCCGAACTTAGTAGAGTCCGTTTTCCGAGCAG; IRR: TGACCTGCCCCCAGTTTTAGTACCGCTGCCTAGTTAGTAGGTCCTGGGGT | P. aeruginosa PAO1 | NC_002516 |
| IS3 (ISAeca4) | 5918861..5919667 | GO602_27515 | IRL: TGATGCTTAGCTGCCTTCCTCGTCTCCGATAAAGGTCCGGCCCAGCGCCGCTTGAGAAAC; IRR: TGAAATCGGGGGGCAGGTCACCGGCTGCTGCGGGTATCCCGCAGCGGCT | Aeromonas caviae | CP024198c |
| IS3 (ISPa32) | 5919740..5920878 | GO602_27520 | IRL: TGACCTGCCCCCCGATTTCAGTACCACGTCAAACTTAGTAGAGTCCGTTTTCCGAGCAG; IRR: TGACCTGCCCCCAGTTTTAGTACCGCTGCCTAGTTAGTAGGCCCTGGGGT | P. aeruginosa PAO1 | NC_002516 |
a
IRL, left inverted repeat; IRR, right inverted repeat.
b
ISfinder tool (http://www-is.biotoul.fr) with the standard parameters (10).
c
Accession number from an NCBI protein BLAST search.