Table 2.
All P. ramosa seed core microbial Amplicon Sequence Variants (ASVs) taxonomic assignation and abundance.
| Marker Gene | ASV identifier and taxonomic identification on SILVA a and UNITE b databases | Relative abundance c (% of the total abundance) | Top hit BLAST onto NCBI database |
|---|---|---|---|
| 16S | ASV2990 Pseudomonas unidentified | 5.55 |
Pseudomonas viridiflava
Pseudomonas rhizosphaerae Pseudomonas abietaniphila Pseudomonas graminis Pseudomonas lutea Pseudomonas donghuensis |
| ASV2265 Stenotrophomonas unidentified | 4.09 |
Stenotrophomonas tumulicola
Stenotrophomonas maltophilia |
|
| ASV226 Stenotrophomonas rhizophila | 4.07 | ||
| ASV2956 Pseudomonas unidentified | 2.45 |
Pseudomonas fluorescens
Pseudomonas koreensis Pseudomonas baetica |
|
| ASV1971 Rhizobium unidentified | 2.41 |
Rhizobium radiobacter
Agrobacterium tumefaciens |
|
| ASV710 Pedobacter unidentified | 2.31 |
Pedobacter roseus
Pedobacter suwonensis Pedobacter agri Pedobacter borealis Pedobacter humicola Pedobacter terrae |
|
| ASV1578 Sphingomonas unidentified | 1.92 |
Sphingomonas faeni
Sphingomonas olei |
|
| ASV2268 Stenotrophomonas chelatiphaga | 1.52 | ||
| ASV2876 Paenibacillus unidentified | 1.48 |
Paenibacillus illinoisensis
Paenibacillus hordei Paenibacillus kyungheensis |
|
| ASV1998 unidentified | 0.66 | Rhodobacter sp. | |
| ITS | ASV2644 Cladosporium unidentified | 32.82 |
Cladosporium cladosporioides
Cladosporium tenuissimum |
| ASV1920 Plectosphaerella cucumerina | 13.34 | ||
| ASV2459 unidentified | 5.18 |
Fusarium avenaceum
Fusarium acuminatum |
|
| ASV1817 unidentified | 2.72 | Alternaria infectoria | |
| ASV2639 Mycosphaerella tassiana | 2.67 | Cladosporium floccosum | |
| ASV2467 Fusarium unidentified | 2.33 | Fusarium oxysporum | |
| ASV140 Vishniacozyma victoriae | 1.85 |
SILVA, database of bacterial species (https://www.arb-silva.de/).
UNITE, database of fungal species (https://unite.ut.ee/).
Relative abundance represents the abundance sum of each seed core ASV expressed as percentage to the total abundance in all samples.