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. 2020 Jul 17;11:1075. doi: 10.3389/fpls.2020.01075

Table 2.

All P. ramosa seed core microbial Amplicon Sequence Variants (ASVs) taxonomic assignation and abundance.

Marker Gene ASV identifier and taxonomic identification on SILVA a and UNITE b databases Relative abundance c (% of the total abundance) Top hit BLAST onto NCBI database
16S ASV2990 Pseudomonas unidentified 5.55 Pseudomonas viridiflava
Pseudomonas rhizosphaerae
Pseudomonas abietaniphila
Pseudomonas graminis
Pseudomonas lutea
Pseudomonas donghuensis
ASV2265 Stenotrophomonas unidentified 4.09 Stenotrophomonas tumulicola
Stenotrophomonas maltophilia
ASV226 Stenotrophomonas rhizophila 4.07
ASV2956 Pseudomonas unidentified 2.45 Pseudomonas fluorescens
Pseudomonas koreensis
Pseudomonas baetica
ASV1971 Rhizobium unidentified 2.41 Rhizobium radiobacter
Agrobacterium tumefaciens
ASV710 Pedobacter unidentified 2.31 Pedobacter roseus
Pedobacter suwonensis
Pedobacter agri
Pedobacter borealis
Pedobacter humicola
Pedobacter terrae
ASV1578 Sphingomonas unidentified 1.92 Sphingomonas faeni
Sphingomonas olei
ASV2268 Stenotrophomonas chelatiphaga 1.52
ASV2876 Paenibacillus unidentified 1.48 Paenibacillus illinoisensis
Paenibacillus hordei
Paenibacillus kyungheensis
ASV1998 unidentified 0.66 Rhodobacter sp.
ITS ASV2644 Cladosporium unidentified 32.82 Cladosporium cladosporioides
Cladosporium tenuissimum
ASV1920 Plectosphaerella cucumerina 13.34
ASV2459 unidentified 5.18 Fusarium avenaceum
Fusarium acuminatum
ASV1817 unidentified 2.72 Alternaria infectoria
ASV2639 Mycosphaerella tassiana 2.67 Cladosporium floccosum
ASV2467 Fusarium unidentified 2.33 Fusarium oxysporum
ASV140 Vishniacozyma victoriae 1.85
a

SILVA, database of bacterial species (https://www.arb-silva.de/).

b

UNITE, database of fungal species (https://unite.ut.ee/).

c

Relative abundance represents the abundance sum of each seed core ASV expressed as percentage to the total abundance in all samples.