Table 3.
Host related – P. ramosa seed core microbial Amplicon Sequence Variants (ASVs) taxonomic assignation and abundance.
| MarkerGene | Originating host | ASV identifier and taxonomic identification on SILVA a and UNITE b databases | Relative abundancec (% of the total abundance) | Top hit BLAST |
|---|---|---|---|---|
| 16S | Oilseed rape | ASV668 Sphingobacterium sp. MIMdw12 | 0.26 | Sphingobacterium spiritivorum |
| ASV3317 Nannocystis unidentified | 0.47 |
Nannocystis pusilla
Nannocystis exedens |
||
| Hemp | ASV718 Pedobacter unidentified | 0.27 |
Pedobacter jejuensis
Pedobacter kribbensis |
|
| Tobacco | ASV638 Sphingobacterium sp. 23D10-4-9 | 0.33 |
Sphingobacterium corticis
Sphingobacterium populi |
|
| ASV2965 Pseudomonas unidentified | 2.41 |
Pseudomonas putida
Pseudomonas plecoglossicida |
||
| ITS | Oilseed rape | ASV1153 unidentified | 0.04 | Gymnochlora stellate |
| ASV1708 Leptosphaeria maculans | 0.03 | Leptosphaeria maculans |
a
SILVA, database of bacterial species (https://www.arb-silva.de/).
b
UNITE, database of fungal species (https://unite.ut.ee/).
cRelative abundance represents the abundance sum of each seed core ASV expressed as percentage to the total abundance in all samples.