TABLE 3.
Differentially methylated CG sites at Parkinson’s disease-associated genes.
| CHR_GENE | CG | p-value | q-value | Delta |
| chr14_54422869_54423420_BMP4 | 54423352 | 5.48E-08 | 5.60E-08 | −3.3 |
| chr20_3140226_3140678_UBOX5 | 3140420 | 2.59E-27 | 9.41E-27 | 2.3 |
| chr20_3140226_3140678_UBOX5 | 3140429 | 3.46E-34 | 1.62E-33 | 3.6 |
| chr4_90228647_90229070_GPRIN3 | 90228692 | 2.37E-07 | 2.24E-07 | −1.1 |
| chr4_90228647_90229070_GPRIN3 | 90228700 | 1.87E-13 | 3.06E-13 | 1.3 |
| chr4_90228647_90229070_GPRIN3 | 90228702 | 3.42E-13 | 5.41E-13 | 1.2 |
| chr4_90228647_90229070_GPRIN3 | 90228709 | 1.23E-33 | 5.49E-33 | −2.5 |
| chr4_90228647_90229070_GPRIN3 | 90228753 | 2.38E-09 | 2.82E-09 | 1.1 |
| chr4_90228647_90229070_GPRIN3 | 90228761 | 1.33E-13 | 2.29E-13 | 1.7 |
| chr4_90228647_90229070_GPRIN3 | 90228764 | 4.10E-07 | 3.73E-07 | 1.0 |
| chr4_90228647_90229070_GPRIN3 | 90228792 | 2.58E-11 | 3.61E-11 | −1.2 |
| chr4_90228647_90229070_GPRIN3 | 90228822 | 4.03E-16 | 8.78E-16 | 1.7 |
| chr4_90228647_90229070_GPRIN3 | 90228849 | 1.47E-36 | 8.03E-36 | 2.7 |
| chr4_90228647_90229070_GPRIN3 | 90228860 | 3.23E-44 | 2.88E-43 | 1.8 |
| chr5_108084418_108084954_FER | 102025087 | 1.53E-06 | 1.26E-06 | −1.6 |
| chr5_108084418_108084954_FER | 102025097 | 5.23E-76 | 8.56E-75 | −4.4 |
| chr5_108084418_108084954_FER | 102025117 | 1.62E-140 | 1.59E-138 | −4.9 |
| chr5_108084418_108084954_FER | 102025151 | 2.40E-14 | 4.62E-14 | −1.3 |
| chr5_108084418_108084954_FER | 102025176 | 2.79E-12 | 4.14E-12 | 1.6 |
| chr5_108084418_108084954_FER | 102025225 | 1.05E-16 | 2.39E-16 | 1.9 |
| chr5_108084418_108084954_FER | 102025228 | 1.12E-19 | 2.98E-19 | 3.4 |
| chr5_108084418_108084954_FER | 102025231 | 1.23E-11 | 1.79E-11 | −2.8 |
| chr5_108084418_108084954_FER | 102025234 | 1.56E-15 | 3.26E-15 | 1.7 |
| chr5_108084418_108084954_FER | 102025251 | 4.73E-03 | 2.52E-03 | −1.8 |
| chr5_108084418_108084954_FER | 102025320 | 5.38E-07 | 4.77E-07 | 1.9 |
| chr5_108084418_108084954_FER | 102025330 | 3.76E-04 | 2.32E-04 | 1.3 |
| chr5_108084418_108084954_FER | 102025334 | 2.60E-04 | 1.67E-04 | −1.7 |
| chr5_108084418_108084954_FER | 102025341 | 1.36E-15 | 2.90E-15 | 2.7 |
| chr5_108084418_108084954_FER | 102025408 | 2.37E-07 | 2.24E-07 | 2.1 |
| chr5_108084418_108084954_FER | 102025430 | 2.26E-03 | 1.28E-03 | −1.4 |
| chr6_154830537_154830958_CNKSR3 | 154830543 | 8.22E-22 | 2.44E-21 | −2.5 |
| chr6_154830537_154830958_CNKSR3 | 154830584 | 1.66E-24 | 5.63E-24 | 1.8 |
| chr6_154830537_154830958_CNKSR3 | 154830770 | 2.43E-59 | 2.65E-58 | −1.5 |
| chr6_154830537_154830958_CNKSR3 | 154830810 | 1.02E-43 | 8.35E-43 | 1.7 |
| chr6_154830537_154830958_CNKSR3 | 154830817 | 3.60E-14 | 6.66E-14 | −1.1 |
| chr6_154830537_154830958_CNKSR3 | 154830837 | 1.41E-93 | 6.93E-92 | 3.3 |
| chr6_154830537_154830958_CNKSR3 | 154830863 | 8.54E-20 | 2.33E-19 | −1.0 |
| chr6_163277806_163278291_PARK2 | 163277841 | 3.89E-04 | 2.38E-04 | −1.7 |
| chr6_163277806_163278291_PARK2 | 163277943 | 8.27E-07 | 7.12E-07 | −2.0 |
| chr7_56173886_56174373_CHCHD2 | 56174016 | 1.67E-08 | 1.76E-08 | −1.1 |
| chr7_56173886_56174373_CHCHD2 | 56174033 | 4.52E-04 | 2.75E-04 | −1.9 |
| chr7_56173886_56174373_CHCHD2 | 56174103 | 1.71E-05 | 1.29E-05 | 1.7 |
| chr7_56173886_56174373_CHCHD2 | 56174107 | 1.01E-08 | 1.11E-08 | −1.1 |
| chr7_56173886_56174373_CHCHD2 | 56174149 | 2.07E-04 | 1.37E-04 | 1.6 |
| chr7_56173886_56174373_CHCHD2 | 56174179 | 3.24E-04 | 2.05E-04 | 1.2 |