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. 2020 Jul 24;11:3723. doi: 10.1038/s41467-020-17531-8

Table 2.

Oligonucleotide sequences used for DNMT1 structural analyses.

Sequence Rank in NNCGNN profile PDB number Reference
TTCCGTAA 2 6W8W This study
TTACGGAA 32 6W8V This study
AGGCGGCC 177 4DA4 Ref. 17
TCGCGAGA 254 – This study

Substrate preferences of DNMT1 determined in the deep enzymology experiments are indicated by the rank of the substrate in the NNCGNN profile, where 1 represents the highest preference and 256 the lowest. The central CpG site is printed in bold letters and the N2 flanks are underlined.