Table 2.
Data collection | Parameter value |
Magnification | 81,000 |
Voltage (kV) | 300 |
electron exposure (e-Å2) | 20 |
Defocus range (um) | 1.25 to 2.25 |
Pixel size (Å) | 1.08 |
Image processing | |
Helical rise (Å) | 4.8 |
Helical twist (°) | 65.32 |
Initial number of particles | 276,180 |
Final number of particles | 116,959 |
Map sharpening B factor (Å2) | −90 |
Model:map FSC (0.50) | 3.5 |
Gold-standard” map:map FSC (0.143) | 3.5 |
Model composition (single flagellin) | |
Nonhydrogen atoms | 4431 |
Number of amino acid residues | 574 |
Number of ligands | 17 |
B factors (Å2) | |
Protein | 76.03 |
Ligand | 106.41 |
Root-mean-square deviations | |
Bond lengths (Å) | 0.006 |
Bond angles (deg) | 0.628 |
Validation | |
MolProbity score | 1.89 |
Clashscore | 7.08 |
Rotamer outliers (%) | 0 |
Protein geometry | |
Ramachandran favored (%) | 91.58 |
Ramachandran allowed (%) | 9.24 |
Ramachandran outliers (%) | 0.17 |
Model PDB ID | 6X80 |
Density map EMDB ID | EMD-22088 |