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. 2020 Jul 21;32(3):107930. doi: 10.1016/j.celrep.2020.107930
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Rabbit polyclonal antibody against Drosophila Unr Generated in-house in Dr. Gebauer laboratory N/A
Mouse monoclonal antibody against V5 Invitrogen RRID: AB_2556564
Mouse monoclonal antibody against a-tubulin Sigma T9026-100UL; RRID: AB_477593

Bacterial and Virus Strains

E. coli chemically competent BL21(DE3) ThermoFisher C600003
E. coli chemically competent Dh5a-T1R ThermoFisher 12297016

Chemicals, Peptides, and Recombinant Proteins

Anti-FLAG M2 magnetic beads Sigma M8823-1ML
Schneider‘s Drosophila medium ThermoFisher 21720001
FBS ThermoFisher 10270106
Effectene QIAGEN 301425
Pierce ECL Western Blotting Substrate ThermoFisher 32209
RNase OUT ThermoFisher 10777019
pCp-Cy5 Jena Bioscience NU-1706-Cy5
Pierce Protein A/G Magnetic Beads ThermoFisher 88803
Sequencing Grade modified trypsin Promega V5111
TMT10plex ThermoFisher 90110
AAA AAA AUG RNA oligomer Biomers N/A
AAA AAA AAA AAA AAA RNA oligomer Biomers N/A

Critical Commercial Assays

BCA Assay Kit ThermoFisher 23227
Dual Luciferase Assay System Promega E1910
Megascript T7 kit ThermoFisher AM1334
Galacto Star (Tropix) ThermoFisher T1012
Renilla-Glo® Luciferase Assay System Promega E2710
Turbo DNA free Kit ThermoFisher AM1907
SuperScript II reverse transcriptase ThermoFisher 18064014
NEBNext Ultra II Directional RNA Library Prep Kit for Illumina NEB E7760
Pierce Silver Stain Kit ThermoFisher 24612

Deposited Data

Structure of drosophila Unr CSD12 This paper PDB: 6Y6M
Structure of drosophila Unr CSD456 This paper PDB: 6Y6E
Structure of drosophila Unr CSD78 This paper PDB: 6Y4H
Structure of drosophila Unr CSD9 This paper PDB: 6Y96
NMR data of drosophila Unr CSD12 This paper BMRB: 34493
NMR data of drosophila Unr CSD456 This paper BMRB: 28088
NMR data of drosophila Unr CSD78 This paper BMRB: 34492
NMR data of drosophila Unr CSD789 This paper BMRB: 28086
NMR data of drosophila Unr CSD9 This paper BMRB: 34498
SAXS data of drosophila Unr CSD456 This paper SASBDB: SASDHJ7
SAXS data of drosophila Unr CSD78 This paper SASBDB: SASDHK7
Proteomics data This paper ProteomeXchange: PXD018115
RIP-seq data This paper https://www.ebi.ac.uk/ena: PRJEB37467

Experimental Models: Cell Lines

Drosophila melanogaster: Schneider’s Drosophila Line 2 ATCC ATCC CRL-1963

Oligonucleotides

Primers for RNAi and qPCR primers, see Table S5 Specific for each primer, check Table S5 N/A

Software and Algorithms

XDS Kabsch, 2010 SBGrid Consortium
Phenix Liebschner et al., 2019 SBGrid Consortium
Coot Emsley et al., 2010 SBGrid Consortium
NMRPipe Delaglio et al., 1995 SBGrid Consortium
Cara Keller, 2004 SBGrid Consortium
CYANA 3.98 Güntert and Buchner, 2015 http://www.cyana.org/wiki/index.php/Main_Page
Talos Shen et al., 2009 SBGrid Consortium
ARIA 1.2 Rieping et al., 2007 SBGrid Consortium
PROCHECK Laskowski et al., 1996 SBGrid Consortium
WHATCHECK Hooft et al., 1996 SBGrid Consortium
NMRFAM-Sparky Lee et al., 2015 SBGrid Consortium
CcpNMR Vranken et al., 2005 SBGrid Consortium
PINT Niklasson et al., 2017 https://pint-nmr.github.io/PINT/
ATSAS 2.7.1 Franke et al., 2017 SBGrid Consortium
STAR aligner 2.7.1a Dobin et al., 2013 https://github.com/alexdobin/STAR
RStudio RStudio SBGrid Consortium
Inkscape Inkscape developers, GNU https://inkscape.org/
GraphPad Prism 5 GraphPad software Inc. https://www.graphpad.com/scientific-software/prism/
PyMol 1.8.2.3 Schrödinger, LLC https://pymol.org/2/
Gnuplot 4 Gnuplot http://www.gnuplot.info