Table 2.
HCV NS5B nucleoside and nucleoside analog pyrophosphorolysis parameters
Shown is a summary of kinetic parameters for pyrophosphorolysis of incorporated nucleosides and nucleoside analogs. The rate constants were derived by fitting the data sets using Scheme 1. S.E. values were derived by nonlinear regression in globally fitting the data (19). Confidence contour analysis supported the use of S.E. estimates derived from nonlinear regression.
| Nucleotide | 1/K1 | k2 | K1 k2 | k−2 | K3 | k−2/K3 × 10−6 |
|---|---|---|---|---|---|---|
| μm | s−1 | μm−1 s−1 | s−1 | μm | μm−1s−1 | |
| CTP | 21 ± 1 | 46 ± 4 | 0.46 ± 0.05 | 0.3 ± 0.03 | 410 ± 50 | 730 ± 100 |
| 2′C-Me-CTP | 1.7 ± 0.2 | 54 ± 7 | 0.032 ± 0.006 | 0.4 ± 0.04 | 820 ± 100 | 460 ± 83 |
| 2′C-Me-2′F-CTP | 1.8 ± 0.2 | 56 ± 7 | 0.031 ± 0.006 | 0.3 ± 0.03 | 1600 ± 200 | 180 ± 24 |
| UTP | 28 ± 5 | 310 ± 70 | 0.09 ± 0.02 | 0.007 ± 0.002 | 1700 ± 200 | 4.1 ± 1 |
| 2′C-Me-2′F-UTP | 410a | 0.3a | 0.00073a | ≤0.01 |
a Rate constants for 2′C-Me-2′F-UTP incorporation are from Table 2.