Dataset | Source |
---|---|
PBMC 3k Seurat V3
object |
https://www.dropbox.com/s/63gnlw45jf7cje8/pbmc3k_final.rds?dl=0 |
CBMC CITE-seq | Accession number, GSE100866:
ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE100nnn/
GSE100866/suppl/GSE100866_CBMC_8K_13AB_10X-RNA_umi.csv.gz |
Hematopoiesis
microarray data |
Accession number, GSE24759: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE24759 |
Tabula Muris as
Seurat V2 objects |
https://figshare.com/projects/Tabula_Muris_Transcriptomic_characterization_of_20_organs_
and_tissues_from_Mus_musculus_at_single_cell_resolution/27733 |
Mouse Cell Atlas | https://doi.org/10.6084/m9.figshare.5435866.v8 |
Pancreatic
scRNA-seq as SingleCellExperiment objects |
https://hemberg-lab.github.io/scRNA.seq.datasets/ |
Allen Institute Brain
Atlas |
http://celltypes.brain-map.org/rnaseq |
PBMC-bench | https://singlecell.broadinstitute.org/single_cell/study/SCP424/single-cell-comparison-pbmc-data |
PBMC rejection test | http://scibet.cancer-pku.cn/document.html |
ImmGen Database | http://www.immgen.org/ |