Table III.
Weighted Pairwise association between gene expression and DNA methylation1
| Gene | Chr | Start | Stop | Spearman |
|---|---|---|---|---|
| SBNO2 | chr19 | 1102569 | 1102675 | 1 |
| SBNO2 | chr19 | 1177517 | 1177605 | 1 |
| PPARG | chr3 | 12392758 | 12392795 | 1 |
| ARHGAP26 | chr5 | 142431271 | 142431331 | 1 |
| ZNF516 | chr18 | 74201176 | 74201349 | −1 |
| AC007278.3 | chr2 | 103052681 | 103052768 | −1 |
| PTRH1 | chr9 | 130474243 | 130474298 | −1 |
| IRF5 | chr7 | 128579512 | 128580582 | 1 |
| NFATC1 | chr18 | 77269145 | 77269329 | −1 |
| IGF2BP2 | chr3 | 185429286 | 185429418 | 1 |
| MIR3945 | chr4 | 185776752 | 185776854 | 1 |
| PPARG | chr3 | 12391954 | 12392194 | 1 |
| JAK1 | chr1 | 65363869 | 65363974 | 1 |
| ZNF516 | chr18 | 74198756 | 74198855 | −1 |
| RP5-968J1.1 | chr20 | 1798583 | 1798776 | −1 |
| WDR59 | chr16 | 75034758 | 75034983 | −1 |
| ANKRD13A | chr12 | 110450642 | 110450723 | 1 |
| PIK3R5 | chr17 | 8867288 | 8867387 | −1 |
| CTD-2319I12.1 | chr17 | 58160030 | 58160123 | −1 |
| IL1R1 | chr2 | 102680182 | 102680254 | −1 |
| MOAP1 | chr14 | 93652953 | 93653040 | 1 |
| METTL9 | chr16 | 21663891 | 21663937 | 1 |
| RASA3 | chr13 | 114900020 | 114900137 | −1 |
| UXS1 | chr2 | 106712973 | 106713176 | 1 |
| TIMM13 | chr19 | 2423123 | 2423287 | −1 |
| SEP9 | chr17 | 75385143 | 75385269 | −1 |
| RGCC | chr13 | 42037300 | 42037548 | −1 |
| AC003104.1 | chr17 | 40425651 | 40425728 | 1 |
| TBC1D7 | chr6 | 13303043 | 13303065 | 1 |
| TRAJ20 | chr14 | 22993035 | 22993190 | 1 |
| FOXP1 | chr3 | 71542816 | 71542914 | 1 |
| TRAK1 | chr3 | 42258087 | 42258157 | −1 |
| SNAP23 | chr15 | 42803175 | 42803323 | 1 |
| ERGIC1 | chr5 | 172314050 | 172314166 | −1 |
| MXRA7 | chr17 | 74709515 | 74709775 | 1 |
| RP11-589N15.1 | chr8 | 11754669 | 11755204 | 1 |
| BIN3 | chr8 | 22503551 | 22503623 | 1 |
| AEN | chr15 | 89168304 | 89168351 | 1 |
| GPR97 | chr16 | 57701448 | 57701619 | 1 |
| ZC3H12A | chr1 | 37937355 | 37937438 | −1 |
| ENDOD1 | chr11 | 94841383 | 94841420 | −1 |
| TREM1 | chr6 | 41254310 | 41254471 | 1 |
| ZNF710 | chr15 | 90547691 | 90548203 | 1 |
| STX5 | chr11 | 62573843 | 62574403 | 1 |
| RP11-426C22.5 | chr16 | 29188779 | 29189157 | −1 |
| TRAJ22 | chr14 | 22993035 | 22993190 | 1 |
| ADAM9 | chr8 | 38855985 | 38856736 | 1 |
| MBNL1 | chr3 | 152046667 | 152046751 | −1 |
| PARN | chr16 | 14530501 | 14530619 | 1 |
| SF1 | chr11 | 64539603 | 64539824 | −1 |
| FCGR2C | chr1 | 161574652 | 161575205 | 1 |
| TMEM80 | chr11 | 692948 | 693088 | 1 |
| HSPA7 | chr1 | 161574652 | 161575205 | 1 |
| RP11-25K21.6 | chr1 | 161574652 | 161575205 | 1 |
1
Summary of genes with significant association between DNA methylation and expression. All associations FDR p value <0.01. Each gene is provided with genomic location for which a significant association with gene expression is reported.