Table 1.
Model RNA substrates used in this study
| RNA substrate, designation | Nucleotide sequence |
|---|---|
| HP1 | 5′ FAM-r(AUAUAAGAUUAUAU)-BHQ1 3′ |
| HP2 | 5′ FAM-r(AUAUAAGAAUUAUAU)-BHQ1 3′ |
| HP3 | 5′ FAM-r(AUAUAAGAUAUUAUAU)-BHQ1 3′ |
| HP4 | 5′ FAM-r(AUAUAAGAUCAUUAUAU)-BHQ1 3′ |
| HP5 | 5′ FAM-r(AUACAACAUAAUUGUAU)-BHQ1 3′ |
| HP6 | 5′ FAM-r(AUAUAACAUCAUUAUAU)-BHQ1 3′ |
| L | 5′ FAM-r(AGAGAGGCAGAGA) 3′ |
Note.
FAM – 6-carboxyfluorescein label; BHQ1 –black hole quencher.
BHQ1 – black hole quencher.