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. 2020 Jul 27;11(7):589. doi: 10.1038/s41419-020-02787-1

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© The Author(s) 2020

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 5 — a Occupancy of clonotypes in each cluster by condition. b Pseudo-time trajectory of CD8⁺ T cells analyzed using Monocle 2. c CD8⁺ T-cell clusters from scRNA-seq overlaid on Monocle 2 pseudo-time plot. d UMAP plots showing CD4 (blue) and CD8 (red) expression in Mki67^hi_s1 by condition. e Percentage of CD4⁺ and CD8⁺ T cells in Mki67^hi_s1 by condition.