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. 2020 Jul 27;10:12541. doi: 10.1038/s41598-020-69381-5

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© The Author(s) 2020

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Haplotype structure across 12 wheat varieties obtained from The 10 + Wheat Genome Project in the ~ 2-Mb sequence window around the most significant marker of QGpc.ipk-6A. The varieties included in the GWAS analysis are indicated with an asterisk, and their best linear unbiased estimations (BLUEs) for grain protein content (GPC) and grain starch content (GSC) are given at the bottom. The marker names (highlighted) are located below the gene IDs from the wheat RefSeq v1.1 that they hit. For each gene, the haplotype structure is indicated in reference to Chinese Spring and then numbered according to their frequency across the 12 varieties. An – indicates the missing data. The allelic information of a given variety is provided for the markers.