Table 1.
Comprehensive nomenclature and genomic and biochemical information for 67 sugar transporter (ST) genes identified in strawberry (F. vesca) (genome v4.0 integrated with protein annotation v4.0.a2)
| Name | Gene ID (v4.0) | Gene ID (v2.0.a2) | Chromosome location | DNA-bp | mRNA-bp | AAa | TMHb | LOCc | MWd | PIe |
|---|---|---|---|---|---|---|---|---|---|---|
| SUT (sucrose transporter) | ||||||||||
| FvSUT1 | FvH4_2g12320 | gene27493 | Fvb2:10809208–10812348 | 3141 | 2284 | 504 | 12 | P10-V3-E1 | 53.4 | 8.29 |
| FvSUT2 | FvH4_2g40120 | gene15110 | Fvb2:28660864–28663047 | 2184 | 1973 | 496 | 12 | P7-V5-E2 | 52.6 | 9.35 |
| FvSUT3 | FvH4_2g22550 | gene08189 | Fvb2:18495248–18496927 | 1680 | 1497 | 498 | 12 | P6-V6-E2 | 52.7 | 9.28 |
| FvSUT4 | FvH4_2g40110 | gene15111 | Fvb2:28658453–28660330 | 1878 | 1497 | 498 | 12 | P6-V6-E2 | 52.7 | 9.33 |
| FvSUT5 | FvH4_5g04290 | gene32070 | Fvb5:2552336–2553811 | 1476 | 1476 | 491 | 12 | P10-V3-Cy1 | 52.6 | 8.72 |
| FvSUT6 | FvH4_5g33660 | gene26850 | Fvb5:24368479–24376566 | 8088 | 2637 | 505 | 10 | P13-V1 | 54.7 | 8.98 |
| FvSUT7 | FvH4_4g31620 | gene03989 | Fvb4:30685393–30691542 | 6150 | 3171 | 604 | 12 | P6-E5-Ch1 | 64.7 | 6.53 |
| FvSUT8 | FvH4_5g04340 | gene32073 | Fvb5:2565141–2566844 | 1704 | 1704 | 491 | 12 | P9-V3-Cy1 | 52.5 | 8.59 |
| STP (sugar transporter protein/monosaccharide transporter) | ||||||||||
| FvSTP1 | FvH4_7g27120 | gene21181 | Fvb7:20326417–20328628 | 2212 | 1866 | 507 | 10 | V8-P4-Cy1 | 55.0 | 9.06 |
| FvSTP2 | FvH4_7g27100 | gene21179 | Fvb7:20319932–20322128 | 2197 | 1856 | 507 | 10 | P8-V3-G2 | 55.2 | 9.19 |
| FvSTP3 | FvH4_5g33980 | gene26442 | Fvb5:24648039–24650128 | 2090 | 1805 | 506 | 12 | P8-V4-Cy1 | 55.2 | 9.17 |
| FvSTP4 | FvH4_3g03900 | gene30715 | Fvb3:2172524–2175538 | 3015 | 2106 | 519 | 11 | P8-V3-Cy1 | 57.6 | 9.09 |
| FvSTP5 | FvH4_3g36050 | gene14091 | Fvb3:30931248–30933020 | 1773 | 1773 | 519 | 12 | P13-E1 | 57.5 | 8.93 |
| FvSTP6 | FvH4_2g06250 | gene28592 | Fvb2:5184017–5185860 | 1844 | 1548 | 515 | 11 | V8-P4-M1 | 56.1 | 8.86 |
| FvSTP7 | FvH4_2g06240 | gene35657 | Fvb2:5177597–5180040 | 2444 | 2444 | 386 | 8 | P10-Ch2-Ex1 | 42.4 | 8.89 |
| FvSTP8 | FvH4_4g15150 | gene05814 | Fvb4:18718148–18723219 | 5072 | 2147 | 529 | 12 | P5-V4-E2 | 57.8 | 8.92 |
| FvSTP9 | FvH4_2g06241 | gene28591 | Fvb2:5181428–5183150 | 1723 | 1548 | 515 | 12 | V10-G2-Cy1 | 56.1 | 8.86 |
| FvSTP10 | FvH4_1g01560 | gene35260 | Fvb1:832380–835157 | 2778 | 2355 | 514 | 11 | P13-V1 | 56.1 | 9.21 |
| FvSTP11 | FvH4_3g36070 | gene14093 | Fvb3:30937830–30939694 | 1865 | 1865 | 519 | 12 | P13-E1 | 57.5 | 8.93 |
| FvSTP12 | FvH4_4g15180 | gene05838 | Fvb4:18782318–18786165 | 3848 | 1838 | 507 | 12 | V6-P5-E2 | 55.3 | 9.39 |
| FvSTP13 | FvH4_4g15220 | gene05833 | Fvb4:18796858–18799448 | 2591 | 1703 | 507 | 12 | V7-P5-Cy1 | 55.2 | 9.32 |
| FvSTP14 | FvH4_4g15172 | gene05840 | Fvb4:18764250–18776097 | 11848 | 1861 | 507 | 12 | P6-V4-E2 | 55.7 | 9.25 |
| FvSTP15 | FvH4_4g15221 | gene05832 | Fvb4:18799848–18803346 | 3499 | 2060 | 515 | 12 | P10-V2-G2 | 56.6 | 9.38 |
| FvSTP16 | FvH4_5g01480 | gene32382 | Fvb5:913079–915584 | 2506 | 2010 | 518 | 12 | P9-V2-E2 | 56.7 | 9.17 |
| FvSTP18 | FvH4_4g15160 | gene05813 | Fvb4:18730034–18732543 | 2510 | 2051 | 509 | 11 | V6-E3-P2 | 55.6 | 9.2 |
| FvSTP19 | FvH4_2g38270 | gene08543 | Fvb2:27722776–27725214 | 2439 | 1894 | 512 | 12 | V10-P3-Cy1 | 56.1 | 9.29 |
| FvSTP20 | FvH4_4g15170 | gene05844 | Fvb4:18754414–18756830 | 2417 | 1979 | 512 | 12 | P5-V5-E2 | 56.1 | 9.07 |
| FvSTP21 | FvH4_5g37390 | gene30013 | Fvb5:27487448–27490353 | 2906 | 2404 | 515 | 12 | P9-V2-E2 | 56.2 | 9.44 |
| FvSTP22 | FvH4_1g05770 | gene11877 | Fvb1:3043103–3046113 | 3011 | 2209 | 515 | 12 | P9-V3-Cy1 | 56.6 | 9.1 |
| FvSTP23 | FvH4_5g37380 | gene30014 | Fvb5:27482815–27486346 | 3532 | 1998 | 462 | 11 | P7-Ch6-M1 | 51.0 | 9.43 |
| FvSTP24 | FvH4_6g00780 | gene16779 | Fvb6:459176–461815 | 2640 | 2242 | 521 | 12 | P12-V1-E1 | 57.3 | 7.89 |
| SFP (sugar facilitator protein) | ||||||||||
| FvSFP1 | FvH4_6g05090 | gene22338 | Fvb6:2827786–2831540 | 3755 | 1707 | 488 | 12 | V9-P4-G1 | 52.3 | 5.07 |
| FvSFP2 | FvH4_6g05060 | gene22342 | Fvb6:2809306–2812407 | 3102 | 1449 | 482 | 12 | P5-V5-E2 | 51.9 | 5.69 |
| FvSFP3 | FvH4_6g05111 | gene41935 | Fvb6:2857091–2864319 | 7229 | 1503 | 475 | 12 | P6-V4-G3 | 50.8 | 5.45 |
| FvSFP4 | FvH4_6g05120 | gene22330 | Fvb6:2865573–2868691 | 3119 | 1484 | 463 | 12 | V9-P4-E1 | 49.6 | 5.29 |
| FvSFP5 | FvH4_6g05051 | gene22344 | Fvb6:2797433–2801865 | 4433 | 1862 | 482 | 12 | P8-V5-E1 | 51.7 | 5.74 |
| FvSFP6 | FvH4_6g05130 | gene37522 | Fvb6:2870088–2873655 | 3568 | 1808 | 492 | 12 | P6-V5-G3 | 52.2 | 7.5 |
| FvSFP7 | FvH4_6g05021 | gene37520 | Fvb6:2781539–2792890 | 11352 | 1516 | 482 | 9 | P11-N2-V1 | 52.2 | 4.78 |
| FvSFP8 | FvH4_2g24280 | gene27745 | Fvb2:19840545–19845044 | 4500 | 2489 | 464 | 12 | P11-V2-E1 | 49.8 | 6.45 |
| FvSFP9 | FvH4_4g16900 | gene06691 | Fvb4:20836435–20840314 | 3880 | 2100 | 490 | 11 | P7-V3-G3 | 53.3 | 8.3 |
| FvSFP10 | FvH4_6g05050 | gene37521 | Fvb6:2792612–2796583 | 3972 | 1943 | 464 | 12 | V11-P2-G1 | 50.3 | 5.36 |
| FvSFP11 | FvH4_2g24290 | gene27747 | Fvb2:19850438–19853719 | 3282 | 1443 | 480 | 12 | P13-V1 | 51.8 | 5.55 |
| FvSFP12 | FvH4_2g24260 | gene27742 | Fvb2:19819035–19823390 | 4356 | 2040 | 468 | 12 | P11-V1-E1 | 50.6 | 8.49 |
| FvSFP13 | FvH4_6g05091 | gene22337 | Fvb6:2831842–2836625 | 4784 | 2001 | 666 | 15 | P8-V4-E1 | 72.3 | 7.49 |
| FvSFP14 | FvH4_6g05092 | gene22336 | Fvb6:2838149–2841691 | 3543 | 1428 | 475 | 10 | P8-V4-E1 | 51.5 | 7.97 |
| FvSFP15 | FvH4_2g39720 | gene15153 | Fvb2:28445198–28450458 | 5261 | 1965 | 486 | 12 | P7-V3-G3 | 52.6 | 7.63 |
| PMT (Polyol/monosaccharide Transporter) | ||||||||||
| FvPMT1 | FvH4_2g08400 | gene20355 | Fvb2:7322676–7325621 | 2946 | 1608 | 535 | 10 | P8-V2-E2 | 57.9 | 8.96 |
| FvPMT2 | FvH4_2g08430 | gene20372 | Fvb2:7341155–7343693 | 2539 | 1796 | 530 | 10 | P9-V2-G2 | 57.8 | 9.26 |
| FvPMT3 | FvH4_1g13630 | gene29572 | Fvb1:7508647–7510873 | 2227 | 1913 | 510 | 12 | P7-V3-G3 | 55.6 | 9.12 |
| FvPMT4 | FvH4_1g04750 | gene35289 | Fvb1:2509124–2512533 | 3410 | 2557 | 543 | 12 | P4-V3-E2 | 59.1 | 9.18 |
| FvPMT5 | FvH4_5g27230 | gene37300 | Fvb5:18513378–18516095 | 2718 | 2436 | 526 | 10 | V6-P5-G3 | 56.6 | 5.35 |
| FvPMT6 | FvH4_3g04750 | gene30425 | Fvb3:2712517–2715598 | 3082 | 2182 | 529 | 10 | P6-V3-G3 | 57.0 | 5.75 |
| FvPMT7 | FvH4_1g04760 | gene30886 | Fvb1:2514290–2516951 | 2662 | 2104 | 524 | 10 | P7-V6-E1 | 57.0 | 9.44 |
| INT (inositol transporter) | ||||||||||
| FvINT1 | FvH4_4g11240 | gene22419 | Fvb4:15033109–15040517 | 7409 | 1893 | 477 | 12 | V8-P4-Cy1 | 51.3 | 5.25 |
| FvINT2 | FvH4_3g00750 | gene19794 | Fvb3:371453–375337 | 3885 | 2555 | 588 | 10 | P13-E1 | 63.9 | 8.73 |
| FvINT3 | FvH4_3g00760 | gene19793 | Fvb3:375957–378870 | 2914 | 2170 | 581 | 12 | P13-V1 | 63.0 | 8.68 |
| TST (tonoplast sugar transporter) | ||||||||||
| FvTST1 | FvH4_5g25950 | gene31477 | Fvb5:17418142–17423728 | 5587 | 3286 | 738 | 10 | P10-V3-M1 | 78.9 | 4.93 |
| FvTST2 | FvH4_1g10110 | gene35340 | Fvb1:5495978–5499471 | 3494 | 2944 | 760 | 11 | P10-V3-G1 | 81.5 | 5.35 |
| FvTST3 | FvH4_1g10120 | gene35341 | Fvb1:5499840–5503255 | 3416 | 2529 | 714 | 10 | P12-V1-G1 | 76.7 | 5.5 |
| FvTST4 | FvH4_2g16850 | gene17337 | Fvb2:14645992–14651997 | 6006 | 4356 | 740 | 11 | P10-V3-G1 | 78.7 | 5.33 |
| pGlcT (plastidic glucose transporter) | ||||||||||
| FvpGlcT1 | FvH4_1g25970 | gene12375 | Fvb1:17880202–17886313 | 6112 | 2192 | 541 | 11 | P11-Ch1-V1 | 57.1 | 9.41 |
| FvpGlcT2 | FvH4_1g04310 | gene30931 | Fvb1:2304681–2310134 | 5454 | 2336 | 500 | 10 | P7-E6-M1 | 53.7 | 7.6 |
| FvpGlcT3 | FvH4_6g31830 | gene37760 | Fvb6:24921813–24927288 | 5476 | 1305 | 434 | 9 | V9-P4-Ex1 | 46.1 | 8.7 |
| FvpGlcT4 | FvH4_6g42430 | gene37879 | Fvb6:33080926–33084593 | 3668 | 2108 | 546 | 11 | P8-Ch3-E2 | 59.7 | 7.95 |
| VGT (vacuolar glucose transporter) | ||||||||||
| FvVGT1 | FvH4_7g33891 | gene38731 | Fvb7:24015104–24019010 | 3907 | 1494 | 497 | 12 | V6-P5-G3 | 53.2 | 5.16 |
| FvVGT2 | FvH4_7g33900 | gene38732 | Fvb7:24019580–24023243 | 3664 | 1497 | 498 | 11 | P7-V3-E2 | 52.8 | 7.54 |
| FvVGT3 | FvH4_3g36930 | gene30209 | Fvb3:31609336–31613511 | 4176 | 2264 | 432 | 10 | P9-V5 | 46.1 | 9.05 |
aNumber of amino acid residues of deduced ST proteins
bNumber of transmembrane helices, as predicted by the TMHMM Server v2
cSubcellular localization, probability values predicted by PSORT (the first three locations shown). abbreviations for sites: P plasma membrane, V vacuolar membrane, Ch chloroplast, M mitochondrion, N nucleus, Er endoplasmatic reticulum, Ex extracellular space, C ycytosolic, G Golgi body
dMolecular weight of the amino acid sequence, kDa is kilo Daltons
eIsoelectric point