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. 2020 Jul 27;10:12488. doi: 10.1038/s41598-020-69101-z

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© The Author(s) 2020

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Density, distribution and recovery of SNP probes. The probe density over 10,000 bp windows is mapped onto the 50 longest A. digitifera reference scaffolds (a). The highest density exceeds 33 probes in a given interval, where most intervals are between 0 to 8 probes. The proportion of designed probes are compared for coding and non-coding regions in the genomes of the coral and symbionts (b). All probes are pink, fixed probes are grey, population probes are orange, and variable probes are green. The recommended probes shared between each plate are shown in the Venn diagrams (c).