Table 1.
A comparison of structural parameters for PLs adapted to various thermal environments
Cp | An | Ec | Tt | St | (Meso) | (Thermo) | |
---|---|---|---|---|---|---|---|
# of amino acidsa | 470.0 | 484.0 | 472.0 | 420.0 | 432.0 | 478 ± 6 | 426 ± 6 |
Proline content (%) | 4.0 | 7.2 | 5.5 | 10.0 | 4.4 | 6.4 ± 0.9 | 7 ± 3 |
Arginine content (%) | 4.7 | 6.4 | 7.2 | 11.7 | 7.6 | 6.8 ± 0.4 | 10 ± 2 |
Non-polar residues (%)a | 53.4 | 57.4 | 55.1 | 62.8 | 40.7 | 56.3 ± 1.2 | 52 ± 11 |
Polar residues (%)a | 46.6 | 42.5 | 44.9 | 37.1 | 28.9 | 43.7 ± 1.2 | 33 ± 4 |
Charged residues (%)a | 25.9 | 21.9 | 25.2 | 30.2 | 30.3 | 23.6 ± 1.7 | 30.3 ± 0.1 |
# of salt bridgesb | 4.3 | 8.3 | 6.8 | 9.3 | 10.6 | 7.6 ± 0.8 | 10.0 ± 0.7 |
# of surface ion pairsc | 6.4 | 4.5 | 6.6 | 10.5 | 11.6 | 5.6 ± 1.1 | 11.1 ± 0.6 |
TSASAa (Å2) | 22,833 | 20,372 | 20,306 | 18,555 | 18,305 | 20,339 ± 33 | 18,430 ± 125 |
TSASA/residue | 48.6 | 42.1 | 43.0 | 44.2 | 42.4 | 42.6 ± 0.5 | 43.3 ± 0.9 |
CHASAb (Å2) | 10,159 | 7587 | 7302 | 7220 | 7083 | 7445 ± 143 | 7152 ± 69 |
CHASA/residue | 21.6 | 15.7 | 15.5 | 17.2 | 16.4 | 15.6 ± 0.1 | 16.8 ± 0.4 |
% CHASA/TSASA | 44.5 | 37.2 | 36.0 | 38.9 | 38.7 | 36.6 ± 0.6 | 38.8 ± 0.1 |
% per residue | 2.3 | 2.7 | 2.8 | 2.6 | 2.6 | 2.8 ± 0.1 | 2.6 |
TSASA total solvent accessible surface area, CHASA conditional hydrophobic accessible surface area. See text for referencing
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