Table 4.

The comparison of prediction performances on the 16th QTL-MAS Workshop dataset

Traits/accuracy	Non-genotyped (n = 100)			Genotyped (n = 1000)
	PBLUP	SSBLUP	SSKAML	PBLUP	LMM	SSBLUP	KAML	SSKAML
T1	0.7823	0.8648	0.8819	0.4549	0.7317	0.7322	0.8011	0.7969
T2	0.7954	0.8726	0.8901	0.5331	0.7708	0.7707	0.8433	0.8378
T3	0.7401	0.8238	0.8418	0.4704	0.7581	0.7579	0.8324	0.8262

PBLUP pedigree information-based BLUP method, LMM genomic information-based BLUP method, SSBLUP single-step BLUP method. For SSBLUP, the weight of pedigree-based relationship matrix for genotyped individuals was 0.05. The diagonal and off-diagonal of both pedigree and genomic relationship matrices were adjusted to the same scale