REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
Recombinant AMMO1 | Snijder et al.55 | N/A |
Recombinant VRC01 | Dr. John Mascola, NIAID Vaccine Research Center | N/A |
CL40 with human constant regions | This study | N/A |
CL59 with human constant regions | This study | N/A |
72A1 with human constant regions | This study | N/A |
hCD45-FITC | ThermoFisher | Cat # 11-9459-41;RRID:AB_1907395 |
mCD45-APC | ThermoFisher | Cat# 17-0451-82;RRID:AB_469392 |
hCD33-PE | BD Biosciences | Cat# 555450; RRID:AB_395843 |
hCD19-PE-Cy7 | ThermoFisher | Cat# MHCD1912;RRID:AB_10373666 |
hCD4-eFluor450 | ThermoFisher | Cat# 48-0048-42;RRID:AB_2016674 |
hCD8-PerCP-Cy5.5 | BD Biosciences | Cat# 560662;RRID:AB_1727513 |
hCD38-PerCP-Cy5.5 | BD Biosciences | Cat# 551400;RRID:AB_394184 |
hCD24-BV605 | Biolegend | Cat# 311123; RRID:AB_2562287 |
hCD4-Alexafluor647 | ThermoFisher | Cat# 56-0048-82;RRID:AB_657741 |
hCD137-BV421 | BD Biosciences | Cat# 564091;RRID:AB_2722503 |
hCD69-BV605 | Biolegend | Cat# 310937;RRID:AB_2562306 |
Goat Anti-Human IgG, Monkey ads-HRP | Southern Biotech | Cat# 2049-05; RRID:AB_2795696 |
hCD19- BV711 | BioLegend | Cat# 302246;RRID:AB_2562065 |
hCD20-AF700 | BioLegend | Cat# 302322;RRID:AB_493753 |
EBNA2-FITC | Novus Biologics | Cat# NBP2-50382F |
Bacterial and Virus Strains | ||
EBV B95.8/F | Delecluse et al.67 | N/A |
Rhesus Lymphocryptovirus strain LCL 8664 | From LCL 8664 Cell line, ATCC | CRL-1805 |
Biological Samples | ||
human CD34-enriched PBSCs | Fred Hutch Co-operative Center for Excellence in Hematology | N/A |
Chemicals, Peptides, and Recombinant Proteins | ||
human recombinant thrombopoietin | PeproTech | Cat# 300-18 |
stem cell factor | PeproTech | Cat# 300-07 |
Flt3-Ligand | PeproTech | Cat# 300-19 |
busulfan | Otsuka America Pharmaceutical | Cat# 516968AA |
mABSelect SuRe | Millipore Sigma | Cat# GE17-5438-01 |
Protein A Agarose | GoldBio | Cat# P-400-5 |
Pierce IgG Elution Buffer | ThermoFisher | Cat# 21009 |
sheared salmon sperm DNA | ThermoFisher | Cat# AM9680 |
rhLCV viral capsid antigen amino acids 117-146: AASAPAATP AVSSSISSLRAATSGAAASSA |
Rao et al.62 | Custom synthesis Genscript |
rhLCV viral capsid antigen amino acids 147-170: AVDTGSGG GAQPQDTSTRGARKKQ |
Rao et al.62 | Custom synthesis Genscript |
rhLCV viral capsid antigen amino acids 117-146 scramble: ISRP SLSAASSASAAAATGSSVASPTAAAA |
This study | Custom synthesis Genscript |
rhLCV viral capsid antigen amino acids147-170 scramble: VGGT SAKGQSKRDGARGTQAQPT |
This study | Custom synthesis Genscript |
HIV-1 Envelope protein 426c.NLGS.TM4.ΔV1-3 | McGuire et al.72 | N/A |
Dylite-650 NHS Ester | ThermoFisher | Cat# 62265 |
GeneJuice Transfection Reagent | EMD Millipore | Cat# 70967 |
12-O-Tetradecanoylphorbol 13-acetate | Sigma Aldrich | Cat# P8139 |
sodium butyrate | Sigma Aldrich | Cat# 303410 |
Cyclosporin A | Fisher Scientific | Cat# AAJ6319103 |
eBioscience Fixable Viability Dye eFluor 506 | ThermoFisher | Cat# 65-0866-18 |
Critical Commercial Assays | ||
DNeasy Blood & Tissue Kit | QIAGEN | Cat# 69504 |
Allprep DNA/RNA mini kit | QIAGEN | Cat# 80204 |
QiaAmp DNA blood mini kit | QIAGEN | Cat# 51104 |
QuantiTect Multiplex PCR Kit | QIAGEN | Cat# 204543 |
ddPCR Supermix for Probes, no-dUTP | Bio-Rad | Cat# 1863024 |
AluI restriction-enzyme | New England BioLabs | Cat# R0137S |
Droplet Generator DG8 Cartridge | Bio-Rad | Cat# 1864008 |
SureBlue Reserve TMB Microwell Peroxidase substrate | SeraCare | Cat# 5120-0081 |
Steady-Glo luciferase reagent | Promega | Cat# E2510 |
Cell Line Nucleofector Kit V | Lonza | Cat# VVCA-1003 |
eBioscience Foxp3 / Transcription Factor Staining Buffer Set | ThermoFisher | Cat# 00-5523-00 |
Experimental Models: Cell Lines | ||
Raji | ATCC | CCL-86 |
293E cells | National Research Council, Canada | N/A |
Freestyle 293-F cells | Thermofisher | Cat# R79007 |
CHO-K1 | ATCC | CCL-61 |
293-T7 | Omerovic et al.75 | N/A |
LCL 8664 cells | ATCC | CRL-1805 |
293T | ATCC | CRL-3216 |
Experimental Models: Organisms/Strains | ||
NOD-scid Il2rgnull mice | The Jackson Laboratory | Stock No: 005557 |
Oligonucleotides | ||
Forward primer specific for EBV BALF5 gene: CCCTGTTTATCC GATGGAATG |
Kimura et al.71 | N/A |
Reverse primer specific for EBV BALF5 gene: CGGAAGCCCTC TGGACTTC |
Kimura et al.71 | N/A |
FAM-labeled probe specific for EBV BALF5 gene: CGCATTTCTC GTGCGTGTACACC |
Kimura et al.71 | N/A |
TaqMan Copy Number Reference Assay, human, RNase P | Thermofisher | Cat# 4403326 |
Rhesus LCV IR1 forward primer AAATCTAAACTTTTGAGGCG ATCTG |
Sashihara et al.63 | N/A |
Rhesus LCV IR1 reverse primer CCAACCATAGACCCGTTTCCT | Sashihara et al.63 | N/A |
FAM-labeled Rhesus LCV IR1 probe TCTCCGCGTGCGCATAAT GGC |
Sashihara et al.63 | N/A |
Rhesus RPP30 forward primer GACTTGGACGTGCGAGCG | This study | N/A |
Rhesus RPP30 reverse primer GCCGCTGTCTCCACAAGT | This study | N/A |
Hex-labeled Rhesus RPP30 probe TCTGACCTGAAGGCTCTG CGCG |
This study | N/A |
Recombinant DNA | ||
Double stranded BALF5 Target DNA for standard: ACCGAGACCCGGCAGGGGGTCCTGCGGTCGAAGGTGCTGG CCTTGAGGGCGCTGAGGACTGCAAACTCCACGTCCAGACCC TGAGGCGCGCTGGCGTAGAAGTAGGCCTGCTGCCCAAACAC GTTCACACACACGCTGGCCCCATCGGCCTTGCGCCGGCCCA GTAGCTTGATGACGATGCCACATGGCACCACATACCCCTGTT TATCCGATGGAATGACGGCGCATTTCTCGTGCGTGTACACCG TCTCGAGTATGTCGTAGACATGGAAGTCCAGAGGGCTTCCGT GGGTGTCTGCCTCCGGCCTTGCCGTGCCCTCTTGGGCACGC TGGCGCCACCACATGCCCTTTCCATCCTCGTCACCCCCCAC CACCGTCAGGGAGTCTTGGTAGAAGCACAGGGGGGGCTGAG GCCCCCGCACATCCACCACCCCTGCGGCGCCTGGTGTCTGG AAACACTTGGGAATGAGACGCAGGTACTCCTTGTCAGGCTTT TTC |
This study | N/A |
pCAGGS-rhLCVgH | Plate et al.73 | N/A |
pCAGGS-rhLCVgL | Plate et al.73 | N/A |
pCAGGS-rhLCVgB | Plate et al.73 | N/A |
p509 | Delecluse et al.67 | N/A |
pT7EMCLuc | Okuma et al.74 | N/A |
Software and Algorithms | ||
QuantaSoft Analysis Software | Bio-Rad | N/A |
Prism 7.03 or later software package | Graph Pad Software | N/A |
Other | ||
QuantStudio 7 Flex Real Time PCR System | Applied Biosystems | N/A |
QX200 ddPCR System | Bio-Rad | N/A |
C1000 Touch Thermal Cycler | Bio-Rad | N/A |
QX200 Droplet Reader | Bio-Rad | N/A |
SpectraMax M2 plate reader | Molecular Devices | N/A |
BD LSRII cytometer | BD Biosciences | N/A |
Ascent FL fluorimeter | Fluoroskan | N/A |
EvosFL imaging system | ThermoFisher | N/A |