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. 2020 Jul 28;124:103936. doi: 10.1016/j.compbiomed.2020.103936

Table 2.

The dock score of screened phytochemicals binding at the active site of the main protease 3CLpro and their important interactions with various amino acid residues.

Phytochemicals B.E. (kcal/mole) Important interactions with residues at the active site, catalytic dyad (HIS41 and CYS145) and GLU166
7-Deacetyl-7-benzoylgedunin −9.1 Carbon hydrogen bond: GLN189; Hydrogen bond: GLU166, HIS163; VDW: ARG188, ASP187, HIS164, GLY143, SER144, LEU141, ASN142, PHE140, HIS172, LEU167; Pi-Pi T-shaped: HIS41; Alkyl: MET165; Pi-Alkyl: CYS145.
Glycyrrhizic acid −8.7 Hydrogen bond: HIS163, PHE140, GLU166, ASP197; Carbon hydrogen bond: HIS41, GLN189, MET165; VDW: MET49, HIS164, ASP187, ARG187, ARG188, THR190, ALA191, LEU50, HIS172, SER144, LEU141, ASN142.
Limonin −8.7 Hydrogen bond: GLU166, HIS163, CYS145; Pi-donor: GLY143; Carbon hydrogen bond: GLN189; VDW: ASN142, HIS164, HIS41, MET49.
Obacunone −7.5 Hydrogen bond: GLU166, HIS163, CYS145; Pi-donor: GLY143; Pi-Alkyl: CYS145; VDW: MET165, GLN189, ASN142, HIS41, HIS164.