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. 2020 Jul 28;10:12628. doi: 10.1038/s41598-020-69245-y

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© The Author(s) 2020

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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(A) The proportion of yeast sequences at all taxonomic levels. The smallest ring represents the class level, followed by the order, family, genus and species levels. (B) The variation of the median similarity scores of the yeast groups at all taxonomic levels. (C) The optimal thresholds and the associated best F-measures predicted for all yeast training datasets at all taxonomic levels. (D) Predicting optimal thresholds for the yeast training datasets using a series of thresholds (between 0.5 and 0.9, with a step of 0.001) at the family level. (E) Predicting optimal thresholds for the yeast training datasets using a series of thresholds (between 0.5 and 0.9, with a step of 0.001) at the order level. (F) The distribution of the yeast dataset. The sequences were colored based on the order name. The sequences of the largest order Saccharomycetales (2,427) were in green, followed by Tremellales (559) in blue, Sporidiobolales (305) in cyan, Trichosporonales (159) in pink, Filobasidiales (122) in yellow, etc. The coordinators of the sequences were generated using fMLC³². The sequences were visualized using the rgl package in R (https://r-forge.r-project.org/projects/rgl/). The numbers in brackets are the numbers of the sequences in the current group. (G) The sequences were colored as in (F) except that the sequences of the Candida genus (730) were colored in red.