Table 2.
Current definition of characterizing mutations of SARS-CoV-2 phylogenetic categorization systems (GISAID clades and PANGOLIN lineages).
| GISAID clade | PANGOLIN lineage | Nucleotide features | Corresponding effects on protein sequence |
|---|---|---|---|
| G | B.1 | C241T C3037T C14408T A23403G |
5′UTR NSP3:F106F NSP12b:P314L S:D614G |
| GH | B.1.* | C241T C3037T C14408T A23403G G25563T |
5′UTR NSP3:F106F NSP12b:P314L S:D614G ORF3a:Q57H |
| GR | B.1.1 | C241T C3037T C14408T A23403G GGG28881AAC |
5′UTR NSP3:F106F NSP12b:P314L S:D614G N:RG203KR |
| S | A | C8782T T28144C |
NSP4:S76S ORF8:L84S |
| V | B.2 | G11083T G26144T |
NSP6:L37F ORF3a:G251V |
| L | Reference in all nts defining clades G, GH, GR, S, and V | ||
| O | Others |