Table 2.
Variants with association p-value less than 1 × 10–6 in GWAS.
| rsID | Chr | pos | A1 | A2 | FRQ | INFO | Beta/OR | SE | p | Func.refGene | Gene.refGene | GeneDetail.refGene |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Percentage change of MADRS from baseline | ||||||||||||
| rs11465988 | 12 | 66641813 | C | T | 0.9898 | 0.51 | − 51.6 | 9.2 | 3.57E−08 | Exonic | IRAK3 | |
| rs17767394 | 12 | 66636086 | C | A | 0.9843 | 0.78 | − 32.7 | 6 | 8.68E−08 | Intronic | IRAK3 | |
| rs4739050 | 8 | 64034747 | G | A | 0.3376 | 1.02 | 7.5 | 1.4 | 6.06E−08 | Intergenic | TTPA;YTHDF3-AS1 | dist = 36135; dist = 45537 |
| rs151184257 | 4 | 105714757 | A | G | 0.9888 | 0.61 | − 40.5 | 7.9 | 4.51E−07 | Intergenic | CXXC4-AS1;TET2 | dist = 96008; dist = 352275 |
| rs115141868 | 2 | 70816605 | A | C | 0.9898 | 0.48 | − 46.8 | 9.3 | 7.65E−07 | Intergenic | TGFA;ADD2 | dist = 35458; dist = 72611 |
| Response status | ||||||||||||
| rs10957273 | 8 | 6.4E+07 | T | C | 0.3028 | 1 | 0.3 | 0.2 | 8.07E−07 | Intergenic | TTPA;YTHDF3-AS1 | dist = 30479; dist = 51193 |
Note that beta coefficient is reported for percentage change of MADRS score from baseline and OR is reported for responder status.