Table 2.

Sequence reads and the proportions of “Unassigned” generated per sample.

Sample	Experiment condition	Base called reads	Quality filtered reads	Goods coverage	The proportions of “Unassigned” (%)
ZymoBIOMICS	MinION (T0)	172,907	127,931	99.7	0.2
	MinION (T1)	122,858	95,121	99.8	0.3
	MinION (T2)	403,620	338,055	99.6	0.3
	MinION (T3)	124,534	103,881	99.7	0.3
	MinION (T4)	188,203	153,855	99.6	0.3
ATCC10	MiSeq	168,892	–	99.3	0.0
	MinION (T0)	52,999	39,317	99.5	1.0
	MinION (T4)	29,652	23,404	99.8	0.0
ATCC20	MiSeq	145,256	–	99.1	0.0
	MinION (T0)	41,745	12,838	99.5	9.7
	MinION (T4)	22,199	12,370	99.8	0.0
B2	MiSeq	312,725	–	99.1	21.8
	MinION (T0)	158,735	50,615	99.4	2.1
	MinION (T4)	14,607	6,896	99.4	0.0
B6	MiSeq	222,258	–	99.5	0.1
	MinION (T0)	110,380	24,681	99.1	12.0
	MinION (T4)	12,176	6,003	99.1	0.0
B7	MiSeq	219,844	–	97.0	0.1
	MinION (T0)	194,442	35,342	96.5	15.1
	MinION (T4)	63,622	52,952	96.8	0.0
B11	MiSeq	300,949	–	98.5	18.7
	MinION (T0)	55,562	28,028	98.5	1.6
	MinION (T4)	29,242	21,861	98.8	0.0
B13	MiSeq	410,523	–	96.3	4.2
	MinION (T0)	108,020	34,912	97.0	1.5
	MinION (T4)	53,586	45,919	96.8	0.0
B14	MiSeq	226,434	–	98.6	26.2
	MinION (T0)	229,720	144,507	99.1	0.6
	MinION (T4)	81,806	61,098	98.6	0.0