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. 2020 Jul 22;11:1729. doi: 10.3389/fmicb.2020.01729

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Copyright © 2020 Blanc, Magalhães, Koenig, Senn and Grandbastien.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Correlation between SNPs and pairwise distances of Pseudomonas aeruginosa isolates analyzed by whole genome sequencing. The number of SNP differences were obtained by a SNP variant calling analysis, whereas the number of allele differences originated from wgMLST or cgMLST analysis. (A) ST17 dataset analyzed by a “relative” cgMLST analysis. (B) ST253 dataset analyzed by a “relative” cgMLST analysis. (C) ST253 dataset analyzed by wgMLST after removing loci from a segment of putative homologous recombination. (D). ST155 dataset analyzed by a “relative” cgMLST analysis. The regression line, its equation and the coefficient of determination (R²) are indicated on each plot.