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. 2020 Jul 29;25(5):731–735. doi: 10.1007/s12192-020-01145-6

Table 2.

Hexapeptides of immunologic relevance shared between SARS-CoV-2 and GBS-related proteins as catalogued in the Immune Epitope Database (IEDB; www.iedb.org)12

Shared
6-mer
SARS-CoV-2
protein
Human proteins
[UniProt-ID; Gene]
Epitopes
[IEDB-ID; Protein; Organism]
KDKKKK

Nucleocapsid

Phosphoprotein

Heat shock protein 90-beta

[P08238; HSP90AB1]

Putative heat shock protein

90-beta 2

[Q58FF8; HSP90AB2P]

KDKKKKTDEAQPLPQRQKKQ

[30186; Nucleoprotein; SARS-CoV]

EPKKDKKKKTDEAQPL

[13680; Nucleoprotein; SARS-CoV]

KTFPPTEPKKDKKKK

[33669; Nucleoprotein; SARS-CoV]

TEPKKDKKKKTDEAQPLPQRQKK + ACET(T1)

[63494; Nucleoprotein; SARS-CoV]

YKTFPPTEPKKDKKKK

[74517; Nucleoprotein; SARS-CoV]

EIPKEE

Orf1ab

Polyprotein

60 kDa heat shock protein,

mitochondrial

[P10809; HSPD1]

VVTEIPKEEKDPGM

[112717; 60 kDa heat shock protein; Homo sapiens]

Each row presents one shared hexamer (first column), the SARS-CoV-2 protein (second column), the human GBS-related protein(s) (third column), and the experimentally validated immunogenic epitopes containing the same hexamer (last column)