Table 3.
Ligands | Binding energy (kcal/mol) |
Predicted inhibitory constant (nM) | Amino acid involved in H-bond/polar contacts (with residue no.) | Amino acid residues within 4 Å of active site and involved in hydrophobic/Van der Waals interaction |
---|---|---|---|---|
Control | ||||
Sinefungin | −7.8 | 3120.05 | Gly71, Asp130, Tyr132, Lys170 | Tyr47, Gly73, Ser74, Asn99, Leu100, Met131, Asp133, Pro134, Phe149 |
Alkaloids based drugs | ||||
Dihydroergotamine | −9.3 | 279.49 | Tyr47, Gly71, Lys170 | Asn43, Gly73, Ser74, Asp75, Lys76, Pro80, Asp99, Leu100, Asn101, Asp130, Met131, Tyr132, Pro134, Glu203 |
Cardiac glycoside | ||||
Digitoxin | −9.1 | 162.91 | Lys24, Tyr30, Tyr132 His174 | Asn43, Gly71, Gly73, Ser74, Asp75, Asp99, Leu100, Asp130, Met131, Asp133, Pro134, Thr136, Phe149, Lys170, Glu173, Ser202, Glu203 |
Anticancer compounds | ||||
Irinotecan | −9.3 | 20.3 | Tyr47, Ser200 | Tyr30, Gly31, Asp32, Ser33, Met42, Asn43, Lys46, Gly71, Gly73, Ser74, Asp99, Leu100, Asp130, Met131, Tyr132, Lys170, Val197, Asn198, Ser201 |
Teniposide | −8.8 | 450.3 | Asp99, Leu100, Asp130, Lys137, Glu203 | Gly71, Gly73, Ser74, Asn101, Met131, Tyr132, Pro134, Lys170, Thr172 |