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. 2020 Aug 26;5:96. Originally published 2020 May 18. [Version 2] doi: 10.12688/wellcomeopenres.15853.2

Table 2. Demonstration Jupyter Notebooks.

Sample Notebook Description Features
omero_upload.ipynb Demonstrates how to connect upload data
by invoking the PyOmeroUpload 		   •   Importing modules
   •   Configuring OMERO server connection
       parameters
   •   Uploading a data directory
omero_query.ipynb Demonstrates how to query the (meta)data
services using the standard OMERO Python
library		    •   Using OMERO Python library client
   •   Constructing and executing
       parameterized HQL queries
   •   Exploring the OMERO object model
       and hierarchy
omero_api.ipynb Demonstrates how to query the (meta)data
services using the OMERO JSON API 28,
without depending on the PyOmeroUpload
client		    •   Using the Python ‘requests’ 29 library to
       connect with and query the OMERO
       JSON API over HTTP
   •   Processing JSON responses