TABLE 3.

Differently abundant taxa detected with Analysis of Composition of Microbiomes (ANCOM) comparing paired bat pre- and post-captivity and comparing post-captive bats according to inoculation.

Comparison	Taxa	W statistic
Captivity timepoint	Pseudonocardia	12
	Staphylococcus	10
	Hafnia.Obesumbacterium	10
	Arthrobacter	10
	Rhodococcus	10
	Pseudarthrobacter	10
	Bacillus	9
	Mycoplasma	9
	Klebsiella	8
	Actinobacillus	8
	Clostridium	8
	Pseudomonas	7
	Yersinia	7
	Flavobacterium	5
Post inoculation	Pseudarthrobacter	10
	Flavobacterium	9
	Pseudomonas	8
	Arthrobacter	7
	Clostridium	7
	Klebsiella	5
	Rhodococcus	5
	Pseudonocardia	4
	Staphylococcus	4
	Bacillus	4
	Actinobacillus	4
	Hafnia.Obesumbacterium	3
	Yersinia	1
	Mycoplasma	0

Analysis was performed on unrarefied table at genus level with relative abundance higher or equal to 0.1%. Significant taxa obtained p < 0.05 after taxa-wise multiple correction. Significant results are in bold.