Table 2.

Significant GWA associations for brain phenotypes

Phenotype	SNP ID	Chr	Position	Allele 1*	Allele 2	P-value	β	se	Minor allele	MAF	INFO	Genes within 500 kb locus window	Locus No.
Sens21, Cereb25	rs6658111	1	47 980 916	G	T	1.1 × 10−13	0.07	0.01	G	0.36	0.99	STIL, CMPK1, FOXE3, FOXD2-AS1, FOXD2, TRABD2B	1
GMVa	rs1452628	1	215 139 887	T	A	5.4 × 10−15	0.06	0.01	T	0.38	1.00	KCNK2	2
DMN17a	rs6540873	1	215 137 222	C	A	6.9 × 10−23	0.09	0.01	C	0.38	1.00	KCNK2	2
Cereb13	rs7589256	2	217 775 937	T	C	1.6 × 10−10	-0.07	0.01	C	0.40	0.99	IGFBP2, IGFBP5, TNP1, LOC105373876	3
Cereb13	rs1039906	4	4 764 026	T	C	1.3 × 10−11	-0.08	0.01	T	0.26	1.00	STX18, STYX-AS1, LOC101928279, MSX1	4
DMN12, Cereb19	rs13107325	4	103 188 709	T	C	1.2 × 10−11	0.14	0.02	T	0.07	1.00	BANK1, SLC39A8, NFKB1	5
Cereb11	rs58972771	5	122 498 768	GCTT	G	6.1 × 10−11	0.09	0.01	GCTT	0.17	0.99	SNX24, PPIC, PRDM6, CEP120	6
DMN17	rs77560239	6	126 710 804	CTGTG	C	1.3 × 10−11	-0.06	0.01	CTGTG	0.43	0.97	CENPW	7
Sens16	rs4719573	7	19 617 100	C	G	6.3 × 10−11	-0.07	0.01	C	0.34	0.99	TWISTNB, MIR3146, TMEM196	8
CC15	rs6465524	7	96 188 457	G	A	3.9 × 10−12	0.08	0.01	G	0.27	1.00	SLC25A13, SEM1	9
GMV	rs55963900	7	120 977 734	A	G	9.8 × 10−12	0.06	0.01	A	0.28	1.00	CPED1, WNT16, FAM3C	10
DMN5	rs4128399	7	151 498 679	C	T	7.2 × 10−13	0.10	0.01	C	0.17	0.96	PRKAG2, LOC644090, PRKAG2-AS1, GALNTL5, GALNT11	11
Cereb6	rs72754248	9	119 061 396	A	G	6.8 × 10−15	0.16	0.02	A	0.07	1.00	PAPPA, ASTN2, ASTN2-AS1, ZNF407, ZADH2, TSHZ1, SMIM21	12
CC4	rs556819846	10	104 646 044	T	TCCTCCCTC	6.9 × 10−14	-0.14	0.02	T	0.08	0.99	TRIM8, ARL3, SFXN2, WBP1L, CYP17A1, BORCS7, AS3MT, CNNM2, NT5C2	13
Cereb11	rs4937515	11	130 268 147	C	G	1.0 × 10−11	-0.07	0.01	G	0.41	0.99	ST14, ZBTB44, ZBTB44-DT, ADAMTS8, ADAMTS15	14
CC9	rs79487293	12	65 905 126	T	C	5.7 × 10−12	-0.08	0.01	T	0.33	1.00	MSRB3, LOC105369187, RPSAP52	15
CC4, DMN17, Cereb25	rs12146713	12	106 476 805	C	T	2.1 × 10−11	-0.11	0.02	C	0.09	1.00	NUAK1, CKAP4, TCP11L2	16

(Continued)