Table 1.
Major topological properties of the empirical phylogenetic Molecular Ecological Networks (pMENs) of fungal communities for soil with (T1 and T2) and without (CK1 and CK2) wheat straw addition and their associated random pMENs.
Empirical networks | Random networksd | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Soil traits | NO. of original OTUsa | Similarity threshold (St) | Network size (n)b | R2 of Power law | Avg connect (avg K) | Avg path length (GD)c | Avg clustering coefficient (avg CC) | Modularity (no. of modules) | Avg path distance (GD) | Avg cluster coefficient (avg CC) | Modularity (M) | |
Flowering stage | CK1 | 300 | 0.89 | 166 | 0.719 | 8.928 | 2.920 | 0.155 | 0.279 (18) | 2.700 ± 0.034 | 0.179 ± 0.011 | 0.236 ± 0.006 |
T1 | 300 | 0.86 | 180 | 0.645 | 11.511 | 2.999 | 0.278 | 0.300 (12) | 2.536 ± 0.030 | 0.235 ± 0.014 | 0.198 ± 0.005 | |
Fruiting stage | CK2 | 300 | 0.87 | 181 | 0.714 | 8.166 | 3.186 | 0.264 | 0.409 (15) | 2.778 ± 0.029 | 0.137 ± 0.013 | 0.266 ± 0.005 |
T2 | 300 | 0.88 | 202 | 0.636 | 12.545 | 2.727 | 0.214 | 0.261 (14) | 2.496 ± 0.026 | 0.253 ± 0.010 | 0.186 ± 0.004 |
aThe number of OTUs that were originally used for network construction using the random matrix theory (RMT)-based approach.
bThe number of OTUs (i.e., nodes) in the network.
cGD geodesic distance.
dThe random networks were generated by rewiring all of the links of a pMEN with the identical numbers of nodes and links to the corresponding empirical pMEN.