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. 2020 Jul 14;5(29):18356–18366. doi: 10.1021/acsomega.0c02096

Table 3. Comparison of the MD Simulation Statistics of the Native CoV2-RdRp and Small Molecule-Bound CoV2-RdRp Complexes for 50 ns.

NAME RMSD (Å) RMSF (Å) SASA (Å2) H-bonds
native RdRp 7.5−10 aa1-aa50: 10–17.5 remaining aa: <10 23,000–26,000 NA
RdRp-GTP 5−12.5 aa1-aa50: 10–20 aa700-aa800: 5 40,000–48,000 15 (0–5 ns); 8 (6–50 ns)
RdRp-FIH 5 aa1-aa50: 5 remaining aa: <2.5 42,000–45,000 4 (0–50 ns)
RdRp-lead 5−10 aa1-aa50: 10 remaining aa: <7.5 41,000–44,000 5 (0–50 ns)