Table 2. Standard Leishmania strains used in partial 6PGDH amino acid–based phylogenetic analysis of cutaneous leishmaniasis isolates, Himachal Pradesh, India, 2014–2018*.
| Species (place of origin) | WHO code | Zymodeme | GenBank accession no. | Pathology |
|---|---|---|---|---|
| WHO standards | ||||
| L. donovani (India) | MHOM/IN/0000/DEVI | MON-2 | AM157147 | VL |
| L. major (Turkmenistan) | MHOM/TM/1973/5ASKH | ND | AY706107 | CL |
| L. infantum | ND | ND | XM_001469106 | ND |
| L. mexicana | MHOM/BZ/82/BEL21 | ND | AY386372 | CL |
| L. tropica | ND | ND | AY045763 | CL |
|
L. amazonensis
|
ND |
ND |
AY168562 |
CL |
| Regional standards | ||||
| L. donovani (China) | MHOM/CN/90/9044 | ND | JX021389 | VL |
| L. donovani (Kenya) | IMAR/KE/1962/LRC–L57 | MON-37 | AJ888902 | ND |
| L. donovani (Sri Lanka) | MHOM/LK/2010/OVN3 | MON-37 | JX481773 | VL |
| L. donovani (Sri Lanka) | MHOM/LK/2002/L59 | MON-37 | AJ888888 | CL |
| L. donovani (Bangladesh) | MHOM/BD/1997/BG1 | ND | AJ888899 | VL |
| L. donovani (Brazil) | ND | ND | AY168567 | ND |
| L. donovani (Kerala, India) | ND | ND | KJ461872 | CL |
*6PGDH, 6-phosphogluconate dehydrogenase gene; CL, cutaneous leishmaniasis; ND, not determined; VL, visceral leishmaniasis; WHO, World Health Organization.