TABLE 2.
Genomic islands identified in the chromosome of strain NCIMB8209a
| Region | Length (kbp) | Location | Integrase gene | Flanking genes (accession no.) | Description |
|---|---|---|---|---|---|
| GI1 | 39.7 | 116596–156278 | C4X49_00725 | LysR-family transcriptional regulator (C4X49_00535)/tRNA-Gly-GCC (C4X49_00740) |
Type III restriction modification system. TA systems (HypBA, YefM-YoeB). ISs |
| GI2 | 30.5 | 569359–599853 | C4X49_02720 | Hypothetical protein (C4X49_02715)/ peptide chain release factor 3 (C4X49_02900) |
Phage proteins. Type I restriction modification system |
| GI3 | 19.1 | 613054–632163 | C4X49_02950 |
dusA (C4X49_02945)/MFS transporter (C4X49_03050) |
Arsenic and heavy metal resistance island |
| GI4 | 12.6 | 1165713–1178263 | C4X49_05820 | tRNA-Ser-TGA (C4X49_05765)/ hypothetical protein (C4X49_05860) |
Hypothetical proteins of unknown function |
| GI5 | 19.1 | 1927268–1946350 | C4X49_09525 | Hypothetical protein (C4X49_09520)/ TetR-AcrR family transcriptional regulator (C4X49_09610) |
Fatty acid catabolic pathway |
| GI6 | 29.3 | 2818151–2847423 | C4X49_13865 | Peptide synthetase (C4X49_13745)/ tRNA-Ser-TGA (C4X49_13870) |
Heavy metal resistance island |
| GI7 | 13.3 | 3133811–3147160 | C4X49_15320 | Sensor histidine kinase (C4X49_15265)/ tRNA-Leu-CAA (C4X49_15325) |
Type I restriction modification system |
a
According to NCBI and RAST annotations.