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. 2020 Jul 29;11:3695. doi: 10.1038/s41467-020-17157-w

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© The Author(s) 2020

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 1 — a Comparison on the evolutionary time scale of the divergence in selected primates and murine taxa. Each point on the primate time scale indicates the split from the human in million years (MYA). Each point on the murine time scale indicates the divergence time for splits among the wild-derived species and strains, and between M. m. domesticus and the classical laboratory inbred strains (denoted by λ). b (top) Pseudogene annotation workflow for mouse strains. b (middle) Unitary pseudogene annotation pipeline. b (bottom) Mouse pseudogene characterisation resource workflow. c Summary of mouse strains’ pseudogene annotation. Level 1 are pseudogenes identified by automatic pipelines and liftover of manual annotation from the reference genome; Level 2 are pseudogenes identified only through the liftover of manually annotated cases from the reference genome; Level 3 are pseudogenes identified only by the automatic annotation pipeline. The total number of pseudogenes in each biotype class and for each confidence level in each strain is available in Supplementary Table 5.