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. 2020 Jul 29;11:3695. doi: 10.1038/s41467-020-17157-w

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© The Author(s) 2020

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 7 — a Cross-tissue pseudogene transcription in the mouse reference genome. The x-axis indicates the number of tissues in which a pseudogene is transcribed. b Distribution of pseudogene transcription in 18 adult mouse tissues. All data of the transcribed mouse reference genome pseudogenes in the 18 tissues is available in Supplementary Data 6. c Heatmap-like plot showing the distribution of transcribed pseudogenes (y-axis) in brain tissue for each wild-derived and classical laboratory mouse strain (x-axis). Each line corresponds to a transcribed pseudogene with an expression level higher than 2 (FPKM). When a line is present across multiple columns, it is indicative of a pseudogene expressed in all these strains. The dark bars at the top of each strain column are formed by multiple highly expressed pseudogenes. When a line is present in only one strain, and no other line is observed at the same level in any of the other strains, this suggests that the pseudogene expression is strain specific. d (top) Number of transcribed pseudogenes that are conserved across all the strains. d (bottom) Number of transcribed strain-specific pseudogenes in each mouse strain. Data recording the transcribed pseudogenes in brain for each strain is available from Supplementary Data 7.