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. 2020 Jul 28;8:e9542. doi: 10.7717/peerj.9542

Table 2. Gene ontology analysis of differentally expressed proteins in VPS28 knockdown BMECs.

Accession Description Ratio
300796460 Pescadillo homolog 0.79
333440457 Immortalization up-regulated protein 1.38
528937065 PREDICTED: fragile X mental retardation syndrome-related protein 1 isoform X6 0.83
741896620 PREDICTED: bifunctional coenzyme A synthase isoform X2 1.25
741972182 PREDICTED: serpin B8 isoform X1 1.33
359069079 PREDICTED: apoptotic chromatin condensation inducer in the nucleus isoform X5 0.74
528978576 PREDICTED: lysosomal acid phosphatase isoform X3 0.8
77736117 Actin, alpha cardiac muscle 1 1.33
741976470 PREDICTED: actin filament-associated protein 1-like 2 isoform X5 0.82
156120791 A-kinase anchor protein 8 0.62
155371939 Putative N-acetylglucosamine-6-phosphate deacetylase 1.23
741911242 PREDICTED: AP-2 complex subunit sigma-like 0.82
115496866 AP-3 complex subunit beta-1 1.22
75832056 Apolipoprotein A-I preproprotein 0.46
114052298 Apolipoprotein A-II precursor 0.55
741944057 PREDICTED: apolipoprotein B-100 isoform X3 0.71
27806739 Apolipoprotein E precursor 0.34
51491835 Ovarian and testicular apolipoprotein N precursor 0.61
528973530 PREDICTED: ADP-ribosylation factor GTPase-activating protein 1 isoform X3 0.8
300798482 Rho GTPase-activating protein 35 1.36
329664977 AT-rich interactive domain-containing protein 1A 0.83
529009701 PREDICTED: acid ceramidase isoform X1 1.62
329663402 ATPase family AAA domain-containing protein 1 0.76
741980112 PREDICTED: atlastin-3 isoform X1 0.83
60101829 ATP synthase subunit 8 (mitochondrion) 1.24
28603752 ATP synthase subunit e, mitochondrial 0.63
116004323 Ataxin-10 0.83
41386683 Beta-2-microglobulin precursor 0.82
84000125 B-cell receptor-associated protein 29 1.34
27806229 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial precursor 0.83
741929024 PREDICTED: uncharacterized protein C4orf3 homolog isoform X1 1.35
741945468 PREDICTED: calcium-binding protein 39-like isoform X1 0.79
45439308 CD63 antigen 1.36
78042548 CD81 antigen 1.25
741967799 PREDICTED: LOW QUALITY PROTEIN: serine/threonine-protein kinase MRCK beta isoform X2 1.37
529002260 PREDICTED: CUB domain-containing protein 1 0.8
77735577 CCR4-NOT transcription complex subunit 7 0.77
741922497 PREDICTED: collagen alpha-3(VI) chain isoform X7 0.81
114052042 COMM domain-containing protein 1 1.23
741945876 PREDICTED: COMM domain-containing protein 6 isoform X2 0.68
528966533 PREDICTED: COP9 signalosome complex subunit 2 isoform X1 0.82
149642865 COP9 signalosome complex subunit 3 0.74
330688478 Crooked neck-like protein 1 1.6
262073106 Cathepsin D precursor 1.23
118151448 CUGBP Elav-like family member 2 1.25
741917150 PREDICTED: cytochrome P450 20A1 isoform X1 1.27
164420721 Dynactin subunit 5 1.29
528937089 PREDICTED: DCN1-like protein 1 isoform X1 0.67
149642575 ATP-dependent RNA helicase DDX24 1.54
114051872 Density-regulated protein 0.81
157427916 H/ACA ribonucleoprotein complex subunit 4 1.22
115497846 deoxyhypusine hydroxylase 1.48
528989517 PREDICTED: developmentally-regulated GTP-binding protein 1 isoform X1 1.47
114051994 Dysbindin 1.35
329663806 Cytoplasmic dynein 1 light intermediate chain 2 1.23
56710336 Dynein light chain 1, cytoplasmic 0.83
77735949 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase 1.24
62751595 Translation initiation factor eIF-2B subunit beta 0.71
300794424 Eukaryotic translation initiation factor 5 0.78
329664532 Ephrin type-A receptor 2 precursor 0.74
77735625 Enhancer of rudimentary homolog 0.81
27806943 Coagulation factor V precursor 0.81
528957418 PREDICTED: protein FAM114A2 isoform X1 1.29
329663573 Protein FAM134A 0.75
359069460 PREDICTED: protein FAM98B 0.8
29135293 Farnesyl pyrophosphate synthase 0.77
77736507 Mitochondrial fission 1 protein 1.27
156718120 Fat storage-inducing transmembrane protein 2 1.23
27806621 Ferritin heavy chain 0.8
114051796 Glucosylceramidase precursor 0.81
84000253 Glutamate--cysteine ligase regulatory subunit 1.21
114051291 GDP-L-fucose synthase 0.78
741919465 PREDICTED: lysosomal protein NCU-G1 isoform X2 0.81
115496402 Glucosamine-6-phosphate isomerase 2 0.83
297488836 PREDICTED: histone H1x 0.82
116812902 Hemoglobin subunit alpha 0.55
17985949 Hemoglobin subunit beta-1 [Rattus norvegicus] 1.23
741905547 PREDICTED: host cell factor 1 isoform X9 1.26
114052627 Hepatocyte growth factor-regulated tyrosine kinase substrate 1.21
134085671 Histone H1.2 0.55
155371863 Histone H1.3 0.54
741971316 PREDICTED: histone H2A type 1-J 1.29
157785601 Histone H2B 0.82
115496175 High mobility group protein HMG-I/HMG-Y 0.8
77736489 Non-histone chromosomal protein HMG-14 0.79
297477251 PREDICTED: heterogeneous nuclear ribonucleoprotein A0 0.83
375364520 HCLS1-binding protein 3 1.48
41386699 Heat shock-related 70 kDa protein 2 1.23
529014943 PREDICTED: immunoglobulin-binding protein 1 isoform X2 1.23
27805955 Ubiquitin-like protein ISG15 0.83
157427772 Involucrin 1.25
195539527 Keratin 15 1.24
77736483 Ragulator complex protein LAMTOR1 0.82
741894288 PREDICTED: galectin-7 1.26
528952868 PREDICTED: LIM and calponin homology domains-containing protein 1 isoform X5 1.36
115497506 LIM and cysteine-rich domains protein 1 1.23
686713724 PREDICTED: LOW QUALITY PROTEIN: collagen alpha-4(VI) chain-like, partial [Pongo abelii] 0.72
741878073 PREDICTED: N-acylneuraminate cytidylyltransferase 1.96
741946731 PREDICTED: ankyrin repeat domain-containing protein 26-like isoform X2 0.35
62460494 Hemoglobin fetal subunit beta 0.56
84000167 WD repeat-containing protein 61 1.36
741960002 PREDICTED: protein arginine N-methyltransferase 1 isoform X2 0.76
297483902 PREDICTED: apolipoprotein R 0.61
155372051 Tropomyosin alpha-4 chain 0.83
78369240 U6 snRNA-associated Sm-like protein LSm4 0.7
122692397 Latexin 0.79
77735445 Protein mago nashi homolog 1.22
741939300 PREDICTED: dual specificity mitogen-activated protein kinase kinase 1 isoform X1 1.21
528995215 PREDICTED: dual specificity mitogen-activated protein kinase kinase 4 isoform X2 1.21
741898851 PREDICTED: MAP/microtubule affinity-regulating kinase 3 isoform X1, partial 0.83
528957564 PREDICTED: methionine adenosyltransferase 2 subunit beta isoform X1 0.81
528966905 PREDICTED: protein max isoform X2 0.76
741957547 PREDICTED: mediator of RNA polymerase II transcription subunit 15 isoform X3 0.79
300794942 DNA mismatch repair protein Msh6 0.74
27806841 interferon-induced GTP-binding protein Mx1 0.73
528936325 PREDICTED: N-alpha-acetyltransferase 50 isoform X1 1.3
375065860 NAD kinase 2, mitochondrial 1.29
300795748 NEDD8-activating enzyme E1 regulatory subunit 0.77
331284195 Nucleolin 1.38
78369204 Protein NDRG2 1.24
28372495 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11 1.23
75812936 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial precursor 1.32
28603776 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial precursor 0.72
528944090 PREDICTED: nexilin isoform X5 0.76
300794221 Nuclear protein localization protein 4 homolog 0.82
83035119 Nuclear transport factor 2 0.79
741958202 PREDICTED: prolyl 3-hydroxylase OGFOD1 isoform X1 0.65
27807193 Platelet-activating factor acetylhydrolase IB subunit beta 1.27
75812940 Phosphatidylethanolamine-binding protein 1 1.27
528913445 PREDICTED: presequence protease, mitochondrial isoform X2 1.21
329664500 Pyruvate kinase PKM 1.25
528961976 PREDICTED: pyruvate kinase PKM isoform X1 1.26
741932605 PREDICTED: perilipin-3 isoform X3 0.82
116004039 Peptidyl-prolyl cis-trans isomerase C precursor 1.22
741957590 PREDICTED: protein phosphatase 1F 1.53
115497768 RelA-associated inhibitor 1.24
528943961 PREDICTED: cAMP-dependent protein kinase catalytic subunit beta isoform X8 1.22
741948151 PREDICTED: pre-mRNA-processing factor 6 isoform X1 0.73
115496548 Proteasome assembly chaperone 1 1.26
741926509 PREDICTED: prostaglandin E synthase 3 isoform X1 0.83
157428086 Ras-related protein Rab-8A 0.8
77736231 Ras-related protein Ral-A 1.2
56118252 RING finger protein 113A 1.27
741937627 PREDICTED: ribosome production factor 2 homolog isoform X1 0.77
27807465 60S ribosomal protein L10 0.79
62751646 60S ribosomal protein L13 0.7
116004215 60S ribosomal protein L13a 0.81
118150852 60S ribosomal protein L15 0.7
62751887 60S ribosomal protein L26 0.77
77404275 60S ribosomal protein L27 0.79
77735585 60S ribosomal protein L36a 0.8
62460480 60S ribosomal protein L4 0.74
114053031 39S ribosomal protein L48, mitochondrial precursor 0.81
72534798 60S ribosomal protein L6 0.72
62460552 60S ribosomal protein L7 0.77
77736197 60S ribosomal protein L8 0.78
164420694 60S ribosomal protein L9 1.21
70778762 60S acidic ribosomal protein P1 1.2
66792924 40S ribosomal protein S11 0.76
77735975 28S ribosomal protein S26, mitochondrial precursor 1.23
528994013 PREDICTED: 28S ribosomal protein S23, mitochondrial isoform X3 1.23
27807381 40S ribosomal protein S29 1.23
70778956 40S ribosomal protein S8 0.79
155372029 40S ribosomal protein S9 0.69
741947465 PREDICTED: ribosome-binding protein 1 isoform X2 1.31
300798287 Sec1 family domain-containing protein 1 0.83
115497454 Protein SEC13 homolog 1.28
300794266 SEC23-interacting protein 1.3
741978352 PREDICTED: protein transport protein Sec24C isoform X2 1.31
115497008 Protein transport protein Sec61 subunit beta 0.82
70778796 Splicing factor 3B subunit 5 1.3
77736509 S-phase kinase-associated protein 1 1.35
82617542 Monocarboxylate transporter 1 1.24
288557348 SWI/SNF complex subunit SMARCC2 0.8
115496404 U1 small nuclear ribonucleoprotein C 0.78
329664862 S1 RNA-binding domain-containing protein 1 0.73
741921253 PREDICTED: serine/arginine-rich splicing factor 11 isoform X4 1.49
329664840 synaptopodin 0.82
84000143 T-complex protein 1 subunit alpha 1.21
114051768 Tudor domain-containing protein 3 1.36
300797062 Tudor domain-containing protein 6 1.52
529000498 PREDICTED: THUMP domain-containing protein 3 isoform X1 1.3
114326224 Tight junction protein ZO-3 1.25
300794719 E3 ubiquitin-protein ligase TRIP12 0.78
27806789 Transthyretin precursor 1.29
529005013 PREDICTED: thioredoxin-like protein 1 isoform X2 1.21
83035103 Ubiquitin-conjugating enzyme E2 H 1.24
528979920 PREDICTED: ubiquitin conjugation factor E4 B isoform X1 1.22
114050863 Ubiquitin-like domain-containing CTD phosphatase 1 0.72
529012185 PREDICTED: UBX domain-containing protein 1 isoform X1 0.78
62751620 Ubiquitin-fold modifier-conjugating enzyme 1 0.82
529006388 PREDICTED: ubiquitin carboxyl-terminal hydrolase 7 isoform X2 1.37
115496338 Vesicle-associated membrane protein-associated protein A 1.2
78369492 Vacuolar protein sorting-associated protein 28 homolog 0.79
78045497 Vitronectin precursor 0.43
741916372 PREDICTED: xin actin-binding repeat-containing protein 2 isoform X2 0.72
126723764 Cap-specific mRNA (nucleoside-2′-O-)-methyltransferase 1 0.8
78042540 Synaptobrevin homolog YKT6 0.82
148224064 Transcriptional repressor protein YY1 0.76
84370039 Zinc finger protein ZPR1 0.77
528942220 PREDICTED: rho guanine nucleotide exchange factor 2 isoform X5 1.2
528962021 PREDICTED: geranylgeranyl transferase type-2 subunit alpha isoform X1 0.83
528979380 PREDICTED: glyoxylate reductase/hydroxypyruvate reductase 1.35