Table 1. Comparison of modern techniques used for detection of cancer mutations.
Sanger sequencing | NGS | qPCR | FISH | CISH | |
---|---|---|---|---|---|
Tumour biopsy | gDNA | gDNA | gDNA | gDNA in fixated cells | gDNA in fixated cells |
Liquid biopsy | cfDNA | cfDNA | cfDNA | / | / |
Sequence information | partial sequence | sequence | partial sequence | point mutation | point mutation |
Time of analysis | 7 days | 3 days | 4h | 4h | 4h |
Precision | nucleotide resolution | nucleotide resolution | mutation resolution | mutation resolution | mutation resolution |
Possibility of simultaneous sample analysis | - | + | + | - | - |
Possibility of simultaneous gene analysis | + | + | - | + (a few) | - |
Costs of a few sample analysis | high | high | low | medium | low |
Costs of high throughput analysis | high | low | low | medium | medium |
+ – possible. - – not possible. NGS – next generation sequencing. qPCR – quantitative polymerase chain reaction. FISH – fluorescence in situ hybridization. CISH – chromogenic in situ hybridization. gDNA – genomic DNA. cfDNA – circulating cell-free DNA. |