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The performance of different docking methods on common 10-protein-peptide complexes, in term of their re-docking ability
| Docking Method | L-RMSD | |
|---|---|---|
| Top pose | Best pose | |
| AutoDock | 8.31 | 5.77 |
| Autodock Vina | 8.37 | 4.57 |
| Surflex-Dock | 8.02 | 4.96 |
| GOLD (ASP)a | 8.52 | 4.65 |
| GOLD (CP)a | 9.59 | 5.51 |
| GOLD (CS)a | 9.86 | 4.99 |
| GOLD (GS)a | 6.39 | 3.95 |
| Hex | 12.27 | 9.55 |
| ZDOCK | 4.87 | 2.14 |
| PatchDock | 11.98 | 4.22 |
| pepATTRACT | 13.07 | 7.66 |
aASP, CP, CS and GS are different scoring functions
