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. 2020 Jul 31;15(7):e0236943. doi: 10.1371/journal.pone.0236943

Table 1. Different cis-regulatory motifs of LmSAP gene promoter predicted by an online program.

Category Cis-element name Function Position
Pathogen, elicitor and wound responsive WRKY710S W box of transcriptional repressor gene of gibberellin signaling pathway, also MYB binding -485 (-), 517(-) - 917 (+), -942 (-) - 957(+), - 146 (-) - 304 (-)
WBOXNTCHN48 W-box found in the chitinase 1 and 2 gene for elicitor responsive expression -504(+)
W-box Wounding-responsive -483(-), -955(+)
WBOXNTERF3 W box, wound signal responsive -516(-), -917(+), -941(-), -957(+)
BIHD10S BELL like homeodomain transcription factor binding site in response to pathogen attack -155(-)
ELRECOREPCRP1 EIRE (Elicitor response element) -484(-)
ABA, Dehydration and salinity stress responsive ABRERATCAL ABRE-related sequence" or "Repeated sequence motifs" identified in the upstream regions of 162 Ca2+ responsive up regulated genes -669(-), -1135(-), -1049(-), -1307(-)
MYB1AT MYB recognition site found in the promoter of dehydration responsive gene rd22 -457(-)
MYC CONSENSUSAT MYC recognition site found in promoter of dehydration responsive genes -349(-), -349(+), -944(-), -1283(+) -1248(+), -1248(-)
ANAERO2CONSENSUS One of the 16 anaerobic stress responsive motifs -986(-), -1196(+)
CBFHV Cold responsive DRE (binding site of HvCBF1) -126(-), -724(+), -795(+)
WBOXATNRP1 Salicylic acid responsive -956(+)
GT1GMSCAM4 GT-1 Salt and pathogen inducible -444(+)
ACGTATERD1 Etiolation induced expression of erd1 -671(-), -671(+), -900(-), -900(+), -1282(-), -757(+), -1065(+), -757(-), -1065(-)
CURECORECR Oxygen deficiency responsive gene expression through copper-sensing signal transduction pathway -4(-), -4(+), -397(-), -397(+), -599(+), -599(-)
DPBFCOREDCDC3 ABA inducible bZIP transcription factor DPBF-1 and 2 binding site -606(-)
DRECRTCOREAT Dehydration-responsive element/C-repeat -126(-)
TC-rich repeats Cis-acting element involved in defense and stress responsiveness -749(-)
Phytohormone responsive ARR1AT Cytokinin regulated ARR1 binding site -1063(+), -1069(-), -1001(+)
CAREOSREP1 Gibberellin regulated proteinase expression -691(+)
ABRE ABA responsiveness -818(-), -900(+)
TGA-element Auxin-responsive element -25(+), -1027(-), -948(-)
GCCCORE Ethylene responsive element -1125(+), -1128(+)
CGTCA-motif MeJA-responsiveness -307(+)
Tissue/cell specific OSE2ROOTNODULE Nodule and organ specific expression after infection -886 (+)
NODCON1GM Nodule specific expression -886 (+)
ROOTMOTIFTAPOX1 Root specific motif -522(-), -663(-), -664(+), -811(+)
RAV1BAT Leaf and root specific -349 (-)
CAATBOX1 Seed specific -404 (+), -491(-), -640(+), -928(+), -1068(+)
POLLEN1LELAT52 Pollen specific activation -8 (+), -407 (-), -470 (-), -744 (+), -749 (+), -1009(-)
GTGANTG10 GTGA motif in late pollen gene g10 promoter -34 (+), -147(+), -310 (-), -352 (+) -390 (+), -506 (+)
GATABOX Leaf and shoot specific -190(-), -524(-), -682(-), -813(-)
TAAGSTKST1 Dof protein regulating guard cell specific gene expression -594(+)
CACTFTPPCA1 Mesophyll specific expression in C4 plants -1(-), -33(-), -99(-), -103(-), -116(-), -158(-), -202(-)
DOFCOREZM Core site required for binding of Dof proteins in maize -123(-), -158(+), -155(-), -195(-), -213(+), -240(+), -286(-), -367(-), -418(-), -418(-), -437(-)
Light responsive ASF1MOTIFCAMV Light induced auxin and salicylic acid regulated as-1 motif -308(-)
EBOXBNNAPA E-Box drive light responsive expression -349(+), -879(-), -944(-), -944(+)
GATABOX Light responsive (found in promoter of all LHCII type I Cab genes -224(+)
GT1CONSENSUS GT-1 motif; Light regulated expression -1007(-), -235(+), -240(+), - 425(+)
G-BOX Light responsive elements -898(-)
GT1CORE Light responsive elements -445(+)
Conserved promoter motifs CAATBOX1 CAAT promoter consensus sequence -650(+), -717(-), -878(+),-712(-), -648(+)
TATABOX4 TATA box found in the 5 'upstream region of sweet potato sporamin A gene -966 (+)
TATABOX5 TATA Box found in the 5’ upstream region of pea (Pisum sativum) glutamine synthetase gene -1081 (+)