Table 3.

Summary results from TransDecoder for each type of predicted open reading frame. T indicates the target K-mer coverage and minimum K-mer indicates the minimum number of K-mers to be included in the initial Inchworm contigs.

Type of coding sequence	T = 50	T = 30	minimum K-mer = 2
Complete (both start and stop codons)	33,362 (63.82%)	33,218 (60.91%)	30,495 (60.57%)
5prime partial alignments	10,393 (19.88%)	11,571 (21.22%)	11,328 (22.50%)
3prime partial alignments	5,140 (9.83%)	6,022 (11.04%)	4,925 (9.78%)
Internal alignments	3,377 (6.46%)	3,721 (6.82%)	3,597 (7.14%)
total	52,272	54,532	50,345